RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PPFIA4O75335 1185 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 MMP1P03956 469 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 NDUFV1P49821 464 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 COASYQ13057 564 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 HDAC1Q13547 482 aaPredicted RBP19.13■□□□□ 0.65
CLN3-264ENST00000637985 TAAR1Q96RJ0 339 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 IWS1Q96ST2 819 aa19.13■□□□□ 0.65
CLN3-264ENST00000637985 RANBP6O60518 1105 aaKnown RBP19.12■□□□□ 0.65
CLN3-264ENST00000637985 MX1P20591 662 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 HOXC8P31273 242 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 CTDSPL2Q05D32 466 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 SYTL5Q8TDW5 730 aaPredicted RBP19.12■□□□□ 0.65
CLN3-264ENST00000637985 TBC1D5Q92609 795 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 SEC62Q99442 399 aaKnown RBP19.12■□□□□ 0.65
CLN3-264ENST00000637985 TMEM47Q9BQJ4 181 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 RC3H2Q9HBD1 1191 aaKnown RBP19.12■□□□□ 0.65
CLN3-264ENST00000637985 COL20A1Q9P218 1284 aa19.12■□□□□ 0.65
CLN3-264ENST00000637985 PRR23AA6NEV1 266 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 CAND2O75155 1236 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 PDHBP11177 359 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 TOP1P11387 765 aaKnown RBP19.11■□□□□ 0.65
CLN3-264ENST00000637985 ANKRD45Q5TZF3 282 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 EFHBQ8N7U6 833 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 OTUD7AQ8TE49 926 aaPredicted RBP19.11■□□□□ 0.65
CLN3-264ENST00000637985 APBB2Q92870 758 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 ATP6V0A1Q93050 837 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 PLVAPQ9BX97 442 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 PLAGL2Q9UPG8 496 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 TRPC6Q9Y210 931 aa19.11■□□□□ 0.65
CLN3-264ENST00000637985 ADGRA3Q8IWK6 1321 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 SALL3Q9BXA9 1300 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 EIF3JO75822 258 aaKnown RBP19.1■□□□□ 0.65
CLN3-264ENST00000637985 ICAM3P32942 547 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 ZNF543Q08ER8 600 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 USH1GQ495M9 461 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 RMDN3Q96TC7 470 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 C16orf70Q9BSU1 422 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 PHF7Q9BWX1 381 aaPredicted RBP19.1■□□□□ 0.65
CLN3-264ENST00000637985 USP15Q9Y4E8 981 aaPredicted RBP19.1■□□□□ 0.65
CLN3-264ENST00000637985 MRVI1Q9Y6F6 885 aa19.1■□□□□ 0.65
CLN3-264ENST00000637985 GVINP1Q7Z2Y8 2422 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 C17orf102A2RUQ5 167 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 FOXP2O15409 715 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 GALR2O43603 387 aaPredicted RBP19.09■□□□□ 0.65
CLN3-264ENST00000637985 ORC4O43929 436 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 CSPG5O95196 566 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 FGRP09769 529 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 NBL1P41271 181 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 MYSM1Q5VVJ2 828 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 PPP2R3CQ969Q6 453 aa19.09■□□□□ 0.65
CLN3-264ENST00000637985 TREHO43280 583 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 CTSHP09668 335 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 DNAJB1P25685 340 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 ID4P47928 161 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 HSDL1Q3SXM5 330 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 ADGRD2Q7Z7M1 963 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 RPGRIP1Q96KN7 1286 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 ANAPC4Q9UJX5 808 aa19.08■□□□□ 0.64
CLN3-264ENST00000637985 GLP2RO95838 553 aa19.07■□□□□ 0.64
CLN3-264ENST00000637985 SNHG28P0DPA3 235 aa19.07■□□□□ 0.64
CLN3-264ENST00000637985 PTPN21Q16825 1174 aa19.07■□□□□ 0.64
CLN3-264ENST00000637985 P2RX5Q93086 422 aa19.07■□□□□ 0.64
CLN3-264ENST00000637985 ZNF689Q96CS4 500 aaPredicted RBP19.07■□□□□ 0.64
CLN3-264ENST00000637985 TCP11L1Q9NUJ3 509 aa19.07■□□□□ 0.64
CLN3-264ENST00000637985 PDGFBP01127 241 aaPredicted RBP19.06■□□□□ 0.64
CLN3-264ENST00000637985 NR3C2P08235 984 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 SMIM10L2AP0DMW4 78 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 SMIM10L2BP0DMW5 78 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 ATF7P17544 494 aaPredicted RBP19.06■□□□□ 0.64
CLN3-264ENST00000637985 BTG3Q14201 252 aaPredicted RBP19.06■□□□□ 0.64
CLN3-264ENST00000637985 FAM26DQ5JW98 314 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 ZMYM1Q5SVZ6 1142 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 CELF3Q5SZQ8 465 aaKnown RBP19.06■□□□□ 0.64
CLN3-264ENST00000637985 ARHGEF16Q5VV41 709 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 SPPL3Q8TCT6 385 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 RIPOR3Q96MK2 946 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 SPATA33Q96N06 139 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 RNPEPQ9H4A4 650 aa19.06■□□□□ 0.64
CLN3-264ENST00000637985 BARX2Q9UMQ3 279 aaPredicted RBP19.06■□□□□ 0.64
CLN3-264ENST00000637985 ABCB11O95342 1321 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 TTC3P53804 2025 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 H3BRB1 525 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 KDM4AO75164 1064 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 RGS20O76081 388 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 EIF2AK2P19525 551 aaKnown RBP19.05■□□□□ 0.64
CLN3-264ENST00000637985 NAALADL2Q58DX5 795 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 MCF2L2Q86YR7 1114 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 SUSD6Q92537 303 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 EVI5LQ96CN4 794 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 RWDD1Q9H446 243 aaPredicted RBP19.05■□□□□ 0.64
CLN3-264ENST00000637985 TUT1Q9H6E5 874 aaKnown RBP19.05■□□□□ 0.64
CLN3-264ENST00000637985 PXMP2Q9NR77 195 aa19.05■□□□□ 0.64
CLN3-264ENST00000637985 ITGB1P05556 798 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 NRIP1P48552 1158 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 PDE1AP54750 535 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 CACNA1BQ00975 2339 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 KCNV1Q6PIU1 500 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 TICAM2Q86XR7 235 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 WDR87Q6ZQQ6 2873 aa19.04■□□□□ 0.64
CLN3-264ENST00000637985 ENPP3O14638 875 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms