RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 AGTPBP1Q9UPW5 1226 aa20.5■□□□□ 0.87
CLN3-263ENST00000637871 KCNJ18B7U540 433 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 PIK3CDO00329 1044 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 N4BP3O15049 544 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 COPB1P53618 953 aaKnown RBP20.49■□□□□ 0.87
CLN3-263ENST00000637871 PDE4DQ08499 809 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 SREBF2Q12772 1141 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 KCNJ12Q14500 433 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 FASTKD5Q7L8L6 764 aaKnown RBP20.49■□□□□ 0.87
CLN3-263ENST00000637871 FAM160B2Q86V87 743 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 IFNL1Q8IU54 200 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 TC2NQ8N9U0 490 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 SNX29Q8TEQ0 813 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 RAD54LQ92698 747 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 BMP2KQ9NSY1 1161 aaPredicted RBP20.49■□□□□ 0.87
CLN3-263ENST00000637871 FBXO28Q9NVF7 368 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 GDAQ9Y2T3 454 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 PARP14Q460N5 1801 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 PDHXO00330 501 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 CYP2C8P10632 490 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 IKQ13123 557 aaPredicted RBP20.49■□□□□ 0.87
CLN3-263ENST00000637871 KRT31Q15323 416 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 Q4G0T1 1027 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 IQCDQ96DY2 449 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 PPP1R13BQ96KQ4 1090 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 FAM20AQ96MK3 541 aa20.49■□□□□ 0.87
CLN3-263ENST00000637871 A0A1W2PQC6 194 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 SPDYE3A6NKU9 549 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 MEIS2O14770 477 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 CIITAP33076 1130 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 MAP2K2P36507 400 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 TM4SF4P48230 202 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 STAT2P52630 851 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 LPAR1Q92633 364 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 P2RX5Q93086 422 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 PNMA5Q96PV4 448 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 EHMT1Q9H9B1 1298 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 KCNMB3Q9NPA1 279 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 BLOC1S4Q9NUP1 217 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 RLFQ13129 1914 aa20.48■□□□□ 0.87
CLN3-263ENST00000637871 WDR46O15213 610 aaKnown RBP20.47■□□□□ 0.87
CLN3-263ENST00000637871 PEX10O60683 326 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 CYP3A4P08684 503 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 SREBF1P36956 1147 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 ANKRD23Q86SG2 305 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 TMEM139Q8IV31 216 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 ERMNQ8TAM6 284 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 CRYGNQ8WXF5 182 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 HAS1Q92839 578 aa20.47■□□□□ 0.87
CLN3-263ENST00000637871 TRMT1Q9NXH9 659 aaKnown RBP20.47■□□□□ 0.87
CLN3-263ENST00000637871 RIOK3O14730 519 aaKnown RBP20.46■□□□□ 0.87
CLN3-263ENST00000637871 CTIFO43310 598 aaKnown RBP20.46■□□□□ 0.87
CLN3-263ENST00000637871 FECHP22830 423 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 HSP90AA4PQ58FG1 418 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 HAUS3Q68CZ6 603 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 TTI2Q6NXR4 508 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 TRIM47Q96LD4 638 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 PLIN2Q99541 437 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 ASCC2Q9H1I8 757 aaPredicted RBP20.46■□□□□ 0.87
CLN3-263ENST00000637871 ABCB11O95342 1321 aa20.46■□□□□ 0.87
CLN3-263ENST00000637871 USP27XA6NNY8 438 aa20.45■□□□□ 0.87
CLN3-263ENST00000637871 KIF20AO95235 890 aa20.45■□□□□ 0.87
CLN3-263ENST00000637871 DNM2P50570 870 aa20.45■□□□□ 0.87
CLN3-263ENST00000637871 ARHGAP4P98171 946 aa20.45■□□□□ 0.87
CLN3-263ENST00000637871 GUF1Q8N442 669 aaKnown RBP20.45■□□□□ 0.87
CLN3-263ENST00000637871 PRR12Q9ULL5 1215 aa20.45■□□□□ 0.87
CLN3-263ENST00000637871 USP17L15C9J2P7 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L13C9JLJ4 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L11C9JVI0 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L18D6R9N7 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L22D6RA61 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L17D6RBQ6 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L19D6RCP7 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L20D6RJB6 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 TEX33O43247 280 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 FLOT1O75955 427 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L24Q0WX57 530 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 USP17L6PQ6QN14 398 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 CATSPERGQ6ZRH7 1159 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 RETREG2Q8NC44 543 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 NUP58Q9BVL2 599 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 R3HDMLQ9H3Y0 253 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 FEM1BQ9UK73 627 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 PNMA2Q9UL42 364 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 RABGAP1Q9Y3P9 1069 aa20.45■□□□□ 0.86
CLN3-263ENST00000637871 LGALS16A8MUM7 142 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 MFAP3LO75121 409 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 INHBEP58166 350 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 ETF1P62495 437 aaKnown RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 IRX3P78415 501 aaPredicted RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 LRRC63Q05C16 580 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 TAF1CQ15572 869 aaPredicted RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 CENPPQ6IPU0 288 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 TMTC1Q8IUR5 882 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 CSGALNACT2Q8N6G5 542 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 LRRC15Q8TF66 581 aa20.44■□□□□ 0.86
CLN3-263ENST00000637871 P2RX7Q99572 595 aaKnown RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 SRRTQ9BXP5 876 aaKnown RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 MRPL11Q9Y3B7 192 aaKnown RBP20.44■□□□□ 0.86
CLN3-263ENST00000637871 PHLPP2Q6ZVD8 1323 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms