RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 TSEN34Q9BSV6 310 aaKnown RBP21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 AGO4Q9HCK5 861 aaKnown RBP21.67■■□□□ 1.06
SQSTM1-216ENST00000626660 NFASCO94856 1347 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 MYADML2A6NDP7 307 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 IPO5O00410 1097 aaKnown RBP21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 SORBS3O60504 671 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 ATP2B1P20020 1258 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 PPTC7Q8NI37 304 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 AFG1LQ8WV93 481 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 MBOAT7Q96N66 472 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 TCEAL9Q9UHQ7 104 aa21.66■■□□□ 1.06
SQSTM1-216ENST00000626660 MOXD2PA6NHM9 499 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 A6NJR5 290 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 NOP56O00567 594 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 CTAGE5O15320 804 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 STX6O43752 255 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 ATP9AO75110 1047 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 TRAPPC10P48553 1259 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 KCNA10Q16322 511 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 LENG9Q96B70 501 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 TBC1D22BQ9NU19 505 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 POLR3EQ9NVU0 708 aa21.65■■□□□ 1.06
SQSTM1-216ENST00000626660 MARCH6O60337 910 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 KPNA6O60684 536 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 IRX5P78411 483 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 SP4Q02446 784 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 BRAPQ7Z569 592 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 NECAB2Q7Z6G3 386 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 JPH1Q9HDC5 661 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 DAXXQ9UER7 740 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 PHF24Q9UPV7 400 aa21.64■■□□□ 1.05
SQSTM1-216ENST00000626660 MSH4O15457 936 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 SLC37A4O43826 429 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 ASGR1P07306 291 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 MMP3P08254 477 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 MYL3P08590 195 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 ACLYP53396 1101 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 ITGB3BPQ13352 177 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 ORC2Q13416 577 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 DGKDQ16760 1214 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 TTC38Q5R3I4 469 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 CCSAPQ6IQ19 270 aaPredicted RBP21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 DIS3LQ8TF46 1054 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 PAWRQ96IZ0 340 aaKnown RBP21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 UIMC1Q96RL1 719 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 C11orf49Q9H6J7 331 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 BCAS3Q9H6U6 928 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 SLC9A2Q9UBY0 812 aa21.63■■□□□ 1.05
SQSTM1-216ENST00000626660 NEMFO60524 1076 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 CABYRO75952 493 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 BAG4O95429 457 aaKnown RBP21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 MNX1P50219 401 aaPredicted RBP21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 HSDL1Q3SXM5 330 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 RILPL1Q5EBL4 403 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 FERMT3Q86UX7 667 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 SLC5A5Q92911 643 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 FAM20AQ96MK3 541 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 RIT2Q99578 217 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 MTMR6Q9Y217 621 aa21.62■■□□□ 1.05
SQSTM1-216ENST00000626660 DDX39AO00148 427 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 TBX3O15119 743 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 GAS7O60861 476 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 PPFIA4O75335 1185 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 MCM7P33993 719 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 LRCH2Q5VUJ6 765 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 CXCL17Q6UXB2 119 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 POTEDQ86YR6 584 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 ETNPPLQ8TBG4 499 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 FERMT2Q96AC1 680 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 VTI1AQ96AJ9 217 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 GLT1D1Q96MS3 346 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 TEKT3Q9BXF9 490 aa21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 SENP6Q9GZR1 1112 aaPredicted RBP21.61■■□□□ 1.05
SQSTM1-216ENST00000626660 DHX15O43143 795 aaKnown RBP21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 KRT76Q01546 638 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 ZNF174Q15697 407 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 CALCRLQ16602 461 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 SLFN12Q8IYM2 578 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 SEPT1Q8WYJ6 367 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 GPR20Q99678 358 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 MTG1Q9BT17 334 aaPredicted RBP21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 KCNMB3Q9NPA1 279 aa21.6■■□□□ 1.05
SQSTM1-216ENST00000626660 A0A1W2PQ45 241 aaPredicted RBP21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 A0A1W2PQY0 241 aa21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 WNT7AO00755 349 aa21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 COL6A1P12109 1028 aa21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 HOXD8P13378 290 aaPredicted RBP21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 PURAQ00577 322 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 ZNF746Q6NUN9 644 aaPredicted RBP21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 UBE2Q1Q7Z7E8 422 aa21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 ZSCAN16Q9H4T2 348 aaPredicted RBP21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 STARD7Q9NQZ5 370 aa21.59■■□□□ 1.05
SQSTM1-216ENST00000626660 ELP1O95163 1332 aa21.58■■□□□ 1.05
SQSTM1-216ENST00000626660 TOB1P50616 345 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-216ENST00000626660 ACTR2P61160 394 aa21.58■■□□□ 1.05
SQSTM1-216ENST00000626660 RESTQ13127 1097 aa21.58■■□□□ 1.05
SQSTM1-216ENST00000626660 PSMD10O75832 226 aa21.57■■□□□ 1.04
SQSTM1-216ENST00000626660 ZNF286BP0CG31 522 aa21.57■■□□□ 1.04
SQSTM1-216ENST00000626660 TCF7P36402 384 aaPredicted RBP21.57■■□□□ 1.04
SQSTM1-216ENST00000626660 NBR1Q14596 966 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms