RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 HNRNPCP07910 306 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS11-209ENST00000622309 VASPP50552 380 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 USP46P62068 366 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 MDM2Q00987 491 aaPredicted RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 UBXN1Q04323 297 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 SPA17Q15506 151 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 VPS72Q15906 364 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 AGBL2Q5U5Z8 902 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KRT28Q7Z3Y7 464 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 KRT27Q7Z3Y8 459 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 ARHGAP18Q8N392 663 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 USP33Q8TEY7 942 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 DNAJC9Q8WXX5 260 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 FAM81BQ96LP2 452 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 RMDN2Q96LZ7 410 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 CARD9Q9H257 536 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 TAB2Q9NYJ8 693 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 CTTNBP2NLQ9P2B4 639 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 AXIN2Q9Y2T1 843 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 THRAP3Q9Y2W1 955 aaKnown RBP8.64□□□□□ -1.03
VPS11-209ENST00000622309 COMMD10Q9Y6G5 202 aa8.64□□□□□ -1.03
VPS11-209ENST00000622309 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 E7ENQ6 273 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 PEX5P50542 639 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 BPIFB4P59827 614 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 SPAG1Q07617 926 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 PPP2R5BQ15173 497 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 SLC4A8Q2Y0W8 1093 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 CFAP221Q4G0U5 840 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 IRGCQ6NXR0 463 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 NFRKBQ6P4R8 1299 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 BICDL1Q6ZP65 573 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 CHST3Q7LGC8 479 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 GRAMD1CQ8IYS0 662 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 TMCO5AQ8N6Q1 288 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 KRI1Q8N9T8 703 aaKnown RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 UBLCP1Q8WVY7 318 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 RAB3IPQ96QF0 476 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 FAM192AQ9GZU8 254 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 NACA2Q9H009 215 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 ABCF3Q9NUQ8 709 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 ZSCAN5CA6NGD5 496 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 ONECUT3O60422 494 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 CCDC166P0CW27 439 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 RARAP10276 462 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 ACADSP16219 412 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 PRLRP16471 622 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 HSPA9P38646 679 aaKnown RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 PIP4K2AP48426 406 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 SH3BGRP55822 239 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 COPS2P61201 443 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 KRT31Q15323 416 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 TTF1Q15361 905 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 KRT71Q3SY84 523 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 CDKAL1Q5VV42 579 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 OLFML1Q6UWY5 402 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 ZBTB8BQ8NAP8 495 aaPredicted RBP8.63□□□□□ -1.03
VPS11-209ENST00000622309 LINS1Q8NG48 757 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 FAM129AQ9BZQ8 928 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 EHD2Q9NZN4 543 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 DUSP10Q9Y6W6 482 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 WDR17Q8IZU2 1322 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 ANKARQ7Z5J8 1434 aa8.63□□□□□ -1.03
VPS11-209ENST00000622309 PRAMEF22A3QJZ6 481 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 BAG3O95817 575 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 HSD17B3P37058 310 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SARSP49591 514 aaKnown RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 COPB1P53618 953 aaKnown RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 AIMP1Q12904 312 aaKnown RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 CHRNA2Q15822 529 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 ERMARDQ5T6L9 678 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 NT5DC1Q5TFE4 455 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 OR52E8Q6IFG1 317 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 MDM1Q8TC05 714 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 HIC2Q96JB3 615 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SELENOSQ9BQE4 189 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.62□□□□□ -1.03
VPS11-209ENST00000622309 KRT23Q9C075 422 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 C9orf78Q9NZ63 289 aaPredicted RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 GGT7Q9UJ14 662 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 USH1CQ9Y6N9 552 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SUPT3HO75486 399 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 WFS1O76024 890 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 MMEP08473 750 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 CALB2P22676 271 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 ZNF844Q08AG5 666 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 TCERG1LQ5VWI1 586 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 HOOK3Q86VS8 718 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 CASKIN2Q8WXE0 1202 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 CHPF2Q9P2E5 772 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 TTC26A0AVF1 554 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 PI4KAP2A4QPH2 592 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 BTBD11A6QL63 1104 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 VCAM1P19320 739 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SESN3P58005 492 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 MCL1Q07820 350 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 SKIV2LQ15477 1246 aaKnown RBP8.62□□□□□ -1.03
VPS11-209ENST00000622309 WASHC4Q2M389 1173 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 CMPK2Q5EBM0 449 aa8.62□□□□□ -1.03
VPS11-209ENST00000622309 STOX1Q6ZVD7 989 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms