RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 LRRN2O75325 713 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 MAPK4P31152 587 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 ARL4AP40617 200 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 THEM5Q8N1Q8 247 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 DHTKD1Q96HY7 919 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 BZW2Q9Y6E2 419 aaKnown RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 FAM196BA6NMK8 535 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 USP17L10C9JJH3 530 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 WDR46O15213 610 aaKnown RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 C1orf228Q6PIY5 440 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 NSUN7Q8NE18 718 aaKnown RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 CDKL2Q92772 493 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 ANGPTL3Q9Y5C1 460 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 JCADQ9P266 1359 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 SLC39A14Q15043 492 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 C17orf53Q8N3J3 647 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 RMDN3Q96TC7 470 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 UBE2TQ9NPD8 197 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-219ENST00000620786 PCDHA6Q9UN73 950 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 PCDHA8Q9Y5H6 950 aa12.36□□□□□ -0.43
CLIP1-219ENST00000620786 WDR64B1ANS9 1081 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ACTN1P12814 892 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 CTNNA1P35221 906 aaKnown RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 NKX1-1Q15270 411 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 URGCPQ8TCY9 931 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 MAGED2Q9UNF1 606 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 GOLGA8IPA6NC78 632 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 GOLGA8JA6NMD2 632 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 STX2P32856 288 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 RASSF7Q02833 373 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 SF3A3Q12874 501 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 PPP2R5EQ16537 467 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 CHMP6Q96FZ7 201 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ABCB11O95342 1321 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 RPAP1Q9BWH6 1393 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 BNIP3LO60238 219 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 YWHAGP61981 247 aaKnown RBP eCLIP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 NR5A1Q13285 461 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 BBOF1Q8ND07 529 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 HDAC11Q96DB2 347 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 FAM167AQ96KS9 214 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 PTPN22Q9Y2R2 807 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 EIF3CLB5ME19 914 aaKnown RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 K7ERI5 159 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 NDUFAB1O14561 156 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 KRT1P04264 644 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 CYP19A1P11511 503 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ZNF445P59923 1031 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 R3HDM1Q15032 1099 aaKnown RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ZNF658Q5TYW1 1059 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 DNAJC24Q6P3W2 148 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 B4GALNT4Q76KP1 1039 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 RASEFQ8IZ41 740 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 CELF1Q92879 486 aaKnown RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 GSDMAQ96QA5 445 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 EIF3CQ99613 913 aaKnown RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ATP6V0A4Q9HBG4 840 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 CRB1P82279 1406 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 PRDX5P30044 214 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 ELF2Q15723 593 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 RAPH1Q70E73 1250 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 SMYD4Q8IYR2 804 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 NUF2Q9BZD4 464 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 RABEP2Q9H5N1 569 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 SMYD2Q9NRG4 433 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 GCNT4Q9P109 453 aa12.35□□□□□ -0.43
CLIP1-219ENST00000620786 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.35□□□□□ -0.43
CLIP1-219ENST00000620786 A2ML1A8K2U0 1454 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 KCNQ2O43526 872 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 AP3B2Q13367 1082 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 SEPT2Q15019 361 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 WHAMMP3Q1A5X7 153 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 OR6B3Q8NGW1 331 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 SPATA31E1Q6ZUB1 1445 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 SPDYE2BA6NHP3 402 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 PLEKHA8P1O95397 391 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 SPDYE6P0CI01 402 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 TROVE2P10155 538 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-219ENST00000620786 TTLL4Q14679 1199 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 ANKRD20A3Q5VUR7 823 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 SLFN12LQ6IEE8 588 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 ARHGAP24Q8N264 748 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 NCAPGQ9BPX3 1015 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 EMILIN3Q9NT22 766 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 AXIN2Q9Y2T1 843 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 CPDO75976 1380 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 MROH7-TTC4A0A0A0MT08 1334 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 PASKQ96RG2 1323 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 BUB1BO60566 1050 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-219ENST00000620786 CHRNA5P30532 468 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 ALCAMQ13740 583 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 NAA35Q5VZE5 725 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 KCTD6Q8NC69 237 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 BANK1Q8NDB2 785 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-219ENST00000620786 TSC1Q92574 1164 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 RAB3IPQ96QF0 476 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-219ENST00000620786 FNDC3AQ9Y2H6 1198 aaKnown RBP12.34□□□□□ -0.43
CLIP1-219ENST00000620786 TET3O43151 1660 aa12.34□□□□□ -0.43
CLIP1-219ENST00000620786 PEX3P56589 373 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms