RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 SLC37A4O43826 429 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 PFKFB2O60825 505 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 PBX2P40425 430 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 PCNX4Q63HM2 1172 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 OTOP2Q7RTS6 562 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 ZNF274Q96GC6 653 aaPredicted RBP6.52□□□□□ -1.36
CPNE3-208ENST00000614678 IWS1Q96ST2 819 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 PPP1R16BQ96T49 567 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 GPR20Q99678 358 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.52□□□□□ -1.36
CPNE3-208ENST00000614678 UBE2OQ9C0C9 1292 aaKnown RBP6.52□□□□□ -1.36
CPNE3-208ENST00000614678 SETD4Q9NVD3 440 aa6.52□□□□□ -1.36
CPNE3-208ENST00000614678 USP34Q70CQ2 3546 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 NID2Q14112 1375 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 MOXD2PA6NHM9 499 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 SPDYE3A6NKU9 549 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 TREHO43280 583 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 SMARCA1P28370 1054 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 ARHGAP4P98171 946 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 MTMR1Q13613 665 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 INF2Q27J81 1249 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 ANKRD33Q7Z3H0 272 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 SLC43A3Q8NBI5 491 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 LZTS2Q9BRK4 669 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 MLXIPQ9HAP2 919 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 UBIAD1Q9Y5Z9 338 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 CPLX1O14810 134 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 GH1P01241 217 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 MBTPS1Q14703 1052 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 PRR16Q569H4 304 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 GTF3C6Q969F1 213 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 DHX15O43143 795 aaKnown RBP6.52□□□□□ -1.37
CPNE3-208ENST00000614678 ARHGEF15O94989 841 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 LGALS2P05162 132 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 RAG1P15918 1043 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 NT5C2P49902 561 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 NLRP5P59047 1200 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 SSRP1Q08945 709 aaKnown RBP6.52□□□□□ -1.37
CPNE3-208ENST00000614678 TMEM62Q0P6H9 643 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 PCSK9Q8NBP7 692 aaKnown RBP6.52□□□□□ -1.37
CPNE3-208ENST00000614678 TBCKQ8TEA7 893 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 RNF26Q9BY78 433 aaPredicted RBP6.52□□□□□ -1.37
CPNE3-208ENST00000614678 NR2E3Q9Y5X4 410 aa6.52□□□□□ -1.37
CPNE3-208ENST00000614678 A0A0U1RQG5 324 aaPredicted RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 BTBD18B2RXH4 712 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ZBTB39O15060 712 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 CHMP2AO43633 222 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ATP4AP20648 1035 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 TCF7P36402 384 aaPredicted RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 IGBP1P78318 339 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 NKX3-2P78367 333 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 RUFY4Q6ZNE9 571 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 SPC25Q9HBM1 224 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ORC3Q9UBD5 711 aaPredicted RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 EVPLQ92817 2033 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 KIF28PB7ZC32 967 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 CTSHP09668 335 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ATP2B1P20020 1258 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 RABGGTBP53611 331 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 UGCGQ16739 394 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 PPTC7Q8NI37 304 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 MXRA8Q9BRK3 442 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 TSEN34Q9BSV6 310 aaKnown RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 HIPK3Q9H422 1215 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 WDR81Q562E7 1941 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ELP1O95163 1332 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 SREBF1P36956 1147 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 MFSD10Q14728 455 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 PTGISQ16647 500 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 PIK3AP1Q6ZUJ8 805 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 ZNF365Q70YC5 407 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 CCDC60Q8IWA6 550 aaPredicted RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 REXO1Q8N1G1 1221 aaKnown RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 IL17RAQ96F46 866 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 NOC4LQ9BVI4 516 aaKnown RBP6.51□□□□□ -1.37
CPNE3-208ENST00000614678 JADE2Q9NQC1 790 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 LOXHD1Q8IVV2 1947 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 GBF1Q92538 1859 aa6.51□□□□□ -1.37
CPNE3-208ENST00000614678 H3BRB1 525 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 MEIS1O00470 390 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 F2P00734 622 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 RBM25P49756 843 aaKnown RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 PSEN2P49810 448 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 CPT1AP50416 773 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 ANAPC15P60006 121 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 CEP55Q53EZ4 464 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 MTG1Q9BT17 334 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 PHF20Q9BVI0 1012 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 BACH2Q9BYV9 841 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 TUT1Q9H6E5 874 aaKnown RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 AGO4Q9HCK5 861 aaKnown RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 WRAP73Q9P2S5 460 aaPredicted RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 PTPRSQ13332 1948 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 MSH4O15457 936 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 FIBPO43427 364 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 MRPL12P52815 198 aaKnown RBP6.5□□□□□ -1.37
CPNE3-208ENST00000614678 DGKDQ16760 1214 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 MARCH8Q5T0T0 291 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 TRAF7Q6Q0C0 670 aa6.5□□□□□ -1.37
CPNE3-208ENST00000614678 PLA2G4DQ86XP0 818 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms