RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MAGEF1Q9HAY2 307 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 ZCCHC17Q9NP64 241 aaKnown RBP16.02■□□□□ 0.16
USP39-220ENST00000613444 STK17AQ9UEE5 414 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 MAN1B1Q9UKM7 699 aa16.02■□□□□ 0.16
USP39-220ENST00000613444 TMEM88BA6NKF7 163 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 GTPBP6O43824 516 aaPredicted RBP16.02■□□□□ 0.15
USP39-220ENST00000613444 GAS7O60861 476 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 ATP9AO75110 1047 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 CCT6AP40227 531 aaKnown RBP16.02■□□□□ 0.15
USP39-220ENST00000613444 NLRP12P59046 1061 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 CUL4BQ13620 913 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 CATSPER3Q86XQ3 398 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 GPRASP2Q96D09 838 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 CCDC34Q96HJ3 373 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 UNC45AQ9H3U1 944 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 ANO10Q9NW15 660 aa16.02■□□□□ 0.15
USP39-220ENST00000613444 POTEB3A0JP26 581 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 STAM2O75886 525 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 PGK2P07205 417 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 RPA1P27694 616 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 POTEBQ6S5H4 581 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 SMARCE1Q969G3 411 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 MMP19Q99542 508 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 HSD17B14Q9BPX1 270 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 TEKT3Q9BXF9 490 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 BLZF1Q9H2G9 400 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 KDM3AQ9Y4C1 1321 aa16.01■□□□□ 0.15
USP39-220ENST00000613444 CCNA1P78396 465 aa16■□□□□ 0.15
USP39-220ENST00000613444 MORC3Q14149 939 aa16■□□□□ 0.15
USP39-220ENST00000613444 FAM110CQ1W6H9 321 aa16■□□□□ 0.15
USP39-220ENST00000613444 HAUS3Q68CZ6 603 aa16■□□□□ 0.15
USP39-220ENST00000613444 ISM2Q6H9L7 571 aa16■□□□□ 0.15
USP39-220ENST00000613444 FAM200AQ8TCP9 573 aa16■□□□□ 0.15
USP39-220ENST00000613444 RAD54LQ92698 747 aa16■□□□□ 0.15
USP39-220ENST00000613444 CCDC102AQ96A19 550 aa16■□□□□ 0.15
USP39-220ENST00000613444 EIF2AK1Q9BQI3 630 aaKnown RBP16■□□□□ 0.15
USP39-220ENST00000613444 POLR3CQ9BUI4 534 aaPredicted RBP16■□□□□ 0.15
USP39-220ENST00000613444 ABT1Q9ULW3 272 aaKnown RBP16■□□□□ 0.15
USP39-220ENST00000613444 MAFGO15525 162 aa16■□□□□ 0.15
USP39-220ENST00000613444 FCER1AP12319 257 aa16■□□□□ 0.15
USP39-220ENST00000613444 KCTD2Q14681 263 aa16■□□□□ 0.15
USP39-220ENST00000613444 IFNL1Q8IU54 200 aa16■□□□□ 0.15
USP39-220ENST00000613444 LARP4BQ92615 738 aaKnown RBP16■□□□□ 0.15
USP39-220ENST00000613444 CDK5RAP3Q96JB5 506 aa16■□□□□ 0.15
USP39-220ENST00000613444 GSDMAQ96QA5 445 aa16■□□□□ 0.15
USP39-220ENST00000613444 NT5C3AQ9H0P0 336 aa16■□□□□ 0.15
USP39-220ENST00000613444 CBX8Q9HC52 389 aa16■□□□□ 0.15
USP39-220ENST00000613444 PKD2L1Q9P0L9 805 aa16■□□□□ 0.15
USP39-220ENST00000613444 ADD3Q9UEY8 706 aaKnown RBP16■□□□□ 0.15
USP39-220ENST00000613444 KIAA1024Q9UPX6 916 aa16■□□□□ 0.15
USP39-220ENST00000613444 STK24Q9Y6E0 443 aa16■□□□□ 0.15
USP39-220ENST00000613444 EIF3JO75822 258 aaKnown RBP15.99■□□□□ 0.15
USP39-220ENST00000613444 SMC2O95347 1197 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 CAVIN2O95810 425 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 MYL1P05976 194 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 KCNA2P16389 499 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 INHBEP58166 350 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 MCM6Q14566 821 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 STXBP2Q15833 593 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 L1TD1Q5T7N2 865 aaKnown RBP15.99■□□□□ 0.15
USP39-220ENST00000613444 NLRX1Q86UT6 975 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 ERMNQ8TAM6 284 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 ZIC5Q96T25 663 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 TBC1D22BQ9NU19 505 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 POTEFA5A3E0 1075 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 SPATA31C2B4DYI2 1134 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 CHMP2AO43633 222 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 KLRC4O43908 158 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 SLITRK3O94933 977 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 DEKP35659 375 aaKnown RBP15.99■□□□□ 0.15
USP39-220ENST00000613444 ZNF165P49910 485 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 IQCB1Q15051 598 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 POTEGQ6S5H5 508 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 TRIML1Q8N9V2 468 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 C7orf25Q9BPX7 421 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 TRIM9Q9C026 710 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 RGL1Q9NZL6 768 aa15.99■□□□□ 0.15
USP39-220ENST00000613444 LOXHD1Q8IVV2 1947 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 ZNF236Q9UL36 1845 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 ICAM3P32942 547 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 EPHA7Q15375 998 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 WDR78Q5VTH9 848 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 TUFT1Q9NNX1 390 aa15.98■□□□□ 0.15
USP39-220ENST00000613444 E9PMD0 336 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 DDX39AO00148 427 aaKnown RBP15.97■□□□□ 0.15
USP39-220ENST00000613444 PSMC6P62333 389 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 CYP4A11Q02928 519 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 SV2BQ7L1I2 683 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 LUZP1Q86V48 1076 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 ABRAQ8N0Z2 381 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 MORC4Q8TE76 937 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 BCAS3Q9H6U6 928 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 MYMKA6NI61 221 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 CCNE2O96020 404 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 RPN1P04843 607 aaKnown RBP15.97■□□□□ 0.15
USP39-220ENST00000613444 TM4SF4P48230 202 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 TAF1CQ15572 869 aaPredicted RBP15.97■□□□□ 0.15
USP39-220ENST00000613444 CNNM4Q6P4Q7 775 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 DYDC2Q96IM9 177 aa15.97■□□□□ 0.15
USP39-220ENST00000613444 CDHR1Q96JP9 859 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms