RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 DGKDQ16760 1214 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 SESTD1Q86VW0 696 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 DGKHQ86XP1 1220 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 HOMER1Q86YM7 354 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 DHX37Q8IY37 1157 aaKnown RBP10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 MYOCDQ8IZQ8 938 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 CCDC155Q8N6L0 562 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 RGS22Q8NE09 1264 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 PIBF1Q8WXW3 757 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 RNF41Q9H4P4 317 aaPredicted RBP10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 SENP2Q9HC62 589 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 TECTAO75443 2155 aa10.08□□□□□ -0.8
SHKBP1-220ENST00000599716 MICAL3Q7RTP6 2002 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 B4DLN1 442 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 HAS3O00219 553 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 UPP2O95045 317 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 GGPS1O95749 300 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 F2P00734 622 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 PARP1P09874 1014 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 IL9P15248 144 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 KCNA5P22460 613 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 THPOP40225 353 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 MRPL12P52815 198 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 HDAC1Q13547 482 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 CYB5R4Q7L1T6 521 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 FCHSD1Q86WN1 690 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 IQCA1Q86XH1 822 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 PLEKHM2Q8IWE5 1019 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 DBF4BQ8NFT6 615 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 SPATA33Q96N06 139 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 TGS1Q96RS0 853 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 PDCD2LQ9BRP1 358 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 IRF2BPLQ9H1B7 796 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 UBE2ZQ9H832 354 aaPredicted RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 MRPL11Q9Y3B7 192 aaKnown RBP10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 TAF6LQ9Y6J9 622 aa10.07□□□□□ -0.8
SHKBP1-220ENST00000599716 H3BQ06 376 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 TREHO43280 583 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 LGR5O75473 907 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 EIF3JO75822 258 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 UBA1P22314 1058 aaKnown RBP10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 HSD17B4P51659 736 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 ERVK-21P61565 698 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 SP4Q02446 784 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 RBL2Q08999 1139 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 PTK7Q13308 1070 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 LEXMQ3ZCV2 418 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 ASPRV1Q53RT3 343 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 IER5LQ5T953 404 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 MYSM1Q5VVJ2 828 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 TRIM50Q86XT4 487 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 MCF2L2Q86YR7 1114 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 PPTC7Q8NI37 304 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 GADD45GIP1Q8TAE8 222 aaPredicted RBP10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 IWS1Q96ST2 819 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 RAD9AQ99638 391 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 DIAPH3Q9NSV4 1193 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 MAD2L2Q9UI95 211 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 PNMA2Q9UL42 364 aa10.06□□□□□ -0.8
SHKBP1-220ENST00000599716 ABHD14A-ACY1A0A1B0GW23 586 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 MED19A0JLT2 244 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 KLRF2D3W0D1 207 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 PROB1E7EW31 1015 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 LAMC2Q13753 1193 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 IKBKEQ14164 716 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 PGM5Q15124 567 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 CELF3Q5SZQ8 465 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 IFIT1BQ5T764 474 aaKnown RBP10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 EP400NLQ6ZTU2 488 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 FBXO22Q8NEZ5 403 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 EMID1Q96A84 441 aaPredicted RBP10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 PIGSQ96S52 555 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 UBAC1Q9BSL1 405 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 C16orf70Q9BSU1 422 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 AMNQ9BXJ7 453 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 FAM86C1Q9NVL1 165 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 RTEL1Q9NZ71 1219 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 PCDHA1Q9Y5I3 950 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 CEP295Q9C0D2 2601 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 ATG2AQ2TAZ0 1938 aa10.05□□□□□ -0.8
SHKBP1-220ENST00000599716 ASH1LQ9NR48 2969 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 RSPH10B2B2RC85 870 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 RSPH10BP0C881 870 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 SMIM10L2AP0DMW4 78 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 SMIM10L2BP0DMW5 78 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 PCP11498 1178 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 MKRN4PQ13434 485 aaPredicted RBP10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 SEC23AQ15436 765 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 IMMTQ16891 758 aaKnown RBP10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 BMP8AQ7Z5Y6 402 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 VSIG10LQ86VR7 867 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 CHD1LQ86WJ1 897 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 SMC5Q8IY18 1101 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 ATP6V0A1Q93050 837 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 CNTNAP3BQ96NU0 1288 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 KATNAL1Q9BW62 490 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 CNTNAP3Q9BZ76 1288 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 RNPEPQ9H4A4 650 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 MLXIPQ9HAP2 919 aa10.04□□□□□ -0.8
SHKBP1-220ENST00000599716 SETD4Q9NVD3 440 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms