RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	GDAP1L1	Q96MZ0	367 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	FMO2	Q99518	471 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PLIN2	Q99541	437 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	3.86	□□□□□ -1.79	3e-25	■□□□□ 8.3
VMP1-216	ENST00000592790	EPC1	Q9H2F5	836 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NLRC4	Q9NPP4	1024 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	TXLNG	Q9NUQ3	528 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NOP53	Q9NZM5	478 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	PCDHA12	Q9UN75	941 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	GDA	Q9Y2T3	454 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	NOC2L	Q9Y3T9	749 aa	Known RBP	3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	ATP6V0A2	Q9Y487	856 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	IKBKG	Q9Y6K9	419 aa		3.86	□□□□□ -1.79
VMP1-216	ENST00000592790	SETD1B	Q9UPS6	1966 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	MPHOSPH10	O00566	681 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BUB1	O43683	1085 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SMTN	P53814	917 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PDCL	Q13371	301 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	DCAF17	Q5H9S7	520 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ARHGEF18	Q6ZSZ5	1173 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CD302	Q8IX05	232 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PARP9	Q8IXQ6	854 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	NOA1	Q8NC60	698 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BANK1	Q8NDB2	785 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	OXER1	Q8TDS5	423 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SDR42E1	Q8WUS8	393 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	GRAMD1A	Q96CP6	724 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TRIM11	Q96F44	468 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	IRX2	Q9BZI1	471 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ISCU	Q9H1K1	167 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SLC39A2	Q9NP94	309 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SPATS2L	Q9NUQ6	558 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TMOD2	Q9NZR1	351 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LARS	Q9P2J5	1176 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BAIAP2L1	Q9UHR4	511 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LCMT1	Q9UIC8	334 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	NFU1	Q9UMS0	254 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	EXOC7	Q9UPT5	735 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SH3BP1	Q9Y3L3	701 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PFAS	O15067	1338 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	DCC	P43146	1447 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	NBPF26	B4DH59	902 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SPOP	O43791	374 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	HNRNPCL1	O60812	293 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	GSTA1	P08263	222 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LSP1	P33241	339 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PBX1	P40424	430 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BCAM	P50895	628 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ERVK-24	P63145	666 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ALCAM	Q13740	583 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BYSL	Q13895	437 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SLC18A3	Q16572	532 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	COBLL1	Q53SF7	1204 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	NAALADL2	Q58DX5	795 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LRCH2	Q5VUJ6	765 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	KCTD16	Q68DU8	428 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CLEC4G	Q6UXB4	293 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	DYM	Q7RTS9	669 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PNMA8A	Q86V59	439 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TEX11	Q8IYF3	940 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CMTR1	Q8N1G2	835 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	MREG	Q8N565	214 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	NBPF15	Q8N660	670 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	FBXO41	Q8TF61	875 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF473	Q8WTR7	871 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	EYA3	Q99504	573 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	UBXN6	Q9BZV1	441 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	KCNK9	Q9NPC2	374 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BARHL2	Q9NY43	387 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SAMM50	Q9Y512	469 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PXDN	Q92626	1479 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LRRC53	A6NM62	1247 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	LRRIQ3	A6PVS8	624 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	KIF3C	O14782	793 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	THAP12	O43422	761 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CTNND1	O60716	968 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	FSBP	O95073	299 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	STX2	P32856	288 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ABCD1	P33897	745 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SSR1	P43307	286 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TOB1	P50616	345 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	IRX4	P78413	519 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CYP27A1	Q02318	531 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	DHX9	Q08211	1270 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PDXDC2P	Q6P474	469 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	BARGIN	Q6ZT62	677 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ZNF365	Q70YC5	407 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	GPBP1	Q86WP2	473 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	VSIG1	Q86XK7	387 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ANKRD35	Q8N283	1001 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	AEN	Q8WTP8	325 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	SREK1	Q8WXA9	508 aa	Known RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	STMN2	Q93045	179 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TBC1D31	Q96DN5	1066 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CHMP6	Q96FZ7	201 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	PSMB7	Q99436	277 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	CHP1	Q99653	195 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	JPH2	Q9BR39	696 aa	Predicted RBP	3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	TRIM9	Q9C026	710 aa		3.85	□□□□□ -1.79
VMP1-216	ENST00000592790	ZMYND12	Q9H0C1	365 aa		3.85	□□□□□ -1.79

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