RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 C17orf102A2RUQ5 167 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 STXBP3O00186 592 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 HAS3O00219 553 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 CPLX1O14810 134 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 LGALS2P05162 132 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 CPA1P15085 419 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 SELPP16109 830 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 DNAJB2P25686 324 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 ADD1P35611 737 aaKnown RBP12.56□□□□□ -0.4
LIG3-214ENST00000592244 ZNF76P36508 570 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 FUT2Q10981 343 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 PFKFB3Q16875 520 aaPredicted RBP12.56□□□□□ -0.4
LIG3-214ENST00000592244 RASIP1Q5U651 963 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 GDF6Q6KF10 455 aaPredicted RBP12.56□□□□□ -0.4
LIG3-214ENST00000592244 C16orf59Q7L2K0 433 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 OTOP2Q7RTS6 562 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 DEFB128Q7Z7B8 93 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 CCDC148Q8NFR7 591 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 TIFAQ96CG3 184 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 SCLYQ96I15 445 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 ZFP91Q96JP5 570 aaPredicted RBP12.56□□□□□ -0.4
LIG3-214ENST00000592244 SDF4Q9BRK5 362 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 AGXT2Q9BYV1 514 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 SEMA6BQ9H3T3 888 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 ZSWIM6Q9HCJ5 1215 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 JADE2Q9NQC1 790 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 UMODL1Q5DID0 1318 aa12.56□□□□□ -0.4
LIG3-214ENST00000592244 ESYT2A0FGR8 921 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 PRPF3O43395 683 aaKnown RBP12.55□□□□□ -0.4
LIG3-214ENST00000592244 EFCAB14O75071 495 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 BAIAP3O94812 1187 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 CDC27P30260 824 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 SP4Q02446 784 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 RBL2Q08999 1139 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 LRRC8DQ7L1W4 858 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 SEPT1Q8WYJ6 367 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 ATP6V0A1Q93050 837 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 FAM161BQ96MY7 647 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 GPR20Q99678 358 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 C16orf70Q9BSU1 422 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 RNF26Q9BY78 433 aaPredicted RBP12.55□□□□□ -0.4
LIG3-214ENST00000592244 FAM217BQ9NTX9 383 aaPredicted RBP12.55□□□□□ -0.4
LIG3-214ENST00000592244 TCEAL9Q9UHQ7 104 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 UBIAD1Q9Y5Z9 338 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 NID2Q14112 1375 aa12.55□□□□□ -0.4
LIG3-214ENST00000592244 KIF28PB7ZC32 967 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 CAND2O75155 1236 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 ATP2A2P16615 1042 aaKnown RBP12.54□□□□□ -0.4
LIG3-214ENST00000592244 ITGB5P18084 799 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 EVCP57679 992 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 SEMA3FQ13275 785 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 CEP55Q53EZ4 464 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 UTP14CQ5TAP6 766 aaKnown RBP12.54□□□□□ -0.4
LIG3-214ENST00000592244 REXO1Q8N1G1 1221 aaKnown RBP12.54□□□□□ -0.4
LIG3-214ENST00000592244 PHOSPHO2Q8TCD6 241 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 GLG1Q92896 1179 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 SLC9A7Q96T83 725 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 MXRA8Q9BRK3 442 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 ANO3Q9BYT9 981 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 AZI2Q9H6S1 392 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 ERAP1Q9NZ08 941 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 EMSYQ7Z589 1322 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 SCN10AQ9Y5Y9 1956 aa12.54□□□□□ -0.4
LIG3-214ENST00000592244 SZT2Q5T011 3432 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 CDKL5O76039 1030 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 RPLP2P05387 115 aaKnown RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 SMIM10L2AP0DMW4 78 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 SMIM10L2BP0DMW5 78 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 CKBP12277 381 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 KCNA2P16389 499 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 IFNAR1P17181 557 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 PDIA3P30101 505 aaKnown RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 TCF7P36402 384 aaPredicted RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 SREBF1P36956 1147 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 KCNJ6P48051 423 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 ANAPC15P60006 121 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 SSRP1Q08945 709 aaKnown RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 ANKRD1Q15327 319 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 NIPA1Q7RTP0 329 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 RSPH3Q86UC2 560 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 FAM177A1Q8N128 213 aaPredicted RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 PPP1R13LQ8WUF5 828 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 ZNF274Q96GC6 653 aaPredicted RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 SLC26A6Q9BXS9 759 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 C22orf23Q9BZE7 217 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 ZMYND12Q9H0C1 365 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 SMARCAD1Q9H4L7 1026 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 ZNF576Q9H609 170 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 SLC28A3Q9HAS3 691 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 JPH1Q9HDC5 661 aaPredicted RBP12.53□□□□□ -0.4
LIG3-214ENST00000592244 SH3GLB2Q9NR46 395 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 PDRG1Q9NUG6 133 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 NRCAMQ92823 1304 aa12.53□□□□□ -0.4
LIG3-214ENST00000592244 THPOP40225 353 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 CCT2P78371 535 aaKnown RBP12.52□□□□□ -0.41
LIG3-214ENST00000592244 ARHGAP4P98171 946 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 SETQ01105 290 aaPredicted RBP12.52□□□□□ -0.41
LIG3-214ENST00000592244 CNKSR3Q6P9H4 555 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 SERINC5Q86VE9 423 aa12.52□□□□□ -0.41
LIG3-214ENST00000592244 SLC17A8Q8NDX2 589 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms