RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 NID2Q14112 1375 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 FRMPD4Q14CM0 1322 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 CNTNAP5Q8WYK1 1306 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 SCN10AQ9Y5Y9 1956 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 ASGR1P07306 291 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 SYN1P17600 705 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 HABP4Q5JVS0 413 aaKnown RBP12.95□□□□□ -0.34
SMAD4-211ENST00000590499 GNASQ5JWF2 1037 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 CMTR1Q8N1G2 835 aaKnown RBP12.95□□□□□ -0.34
SMAD4-211ENST00000590499 PCSK9Q8NBP7 692 aaKnown RBP12.95□□□□□ -0.34
SMAD4-211ENST00000590499 SCFD2Q8WU76 684 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 PIBF1Q8WXW3 757 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 MPHOSPH6Q99547 160 aaKnown RBP12.95□□□□□ -0.34
SMAD4-211ENST00000590499 GDF15Q99988 308 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 AGXT2Q9BYV1 514 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 WDR11Q9BZH6 1224 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 SPC25Q9HBM1 224 aa12.95□□□□□ -0.34
SMAD4-211ENST00000590499 FAM217BQ9NTX9 383 aaPredicted RBP12.95□□□□□ -0.34
SMAD4-211ENST00000590499 ELP1O95163 1332 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 B4DLN1 442 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 GCOM1H8Y6P7 765 aaPredicted RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 DYNC1LI2O43237 492 aaPredicted RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 ZBTB43O43298 467 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 ARIH2O95376 493 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 CD2BP2O95400 341 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 POLR2MP0CAP2 368 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 EIF2AK2P19525 551 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 RPS6KB1P23443 525 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 HOXA13P31271 388 aaPredicted RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 MRPL12P52815 198 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 BEX3Q00994 111 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 FSCN1Q16658 493 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 CCDC62Q6P9F0 684 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 BLOC1S2Q6QNY1 142 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 NOL8Q76FK4 1167 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 PDCD2LQ9BRP1 358 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 STARD7Q9NQZ5 370 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 RBM28Q9NW13 759 aaKnown RBP12.94□□□□□ -0.34
SMAD4-211ENST00000590499 ATP11BQ9Y2G3 1177 aa12.94□□□□□ -0.34
SMAD4-211ENST00000590499 KLF18A0A0U1RQI7 1052 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 PIK3CDO00329 1044 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 NKRFO15226 690 aaKnown RBP eCLIP12.93□□□□□ -0.34
SMAD4-211ENST00000590499 NR3C2P08235 984 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 CASTP20810 708 aaKnown RBP12.93□□□□□ -0.34
SMAD4-211ENST00000590499 CLCN1P35523 988 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 MAGEA10P43363 369 aaPredicted RBP12.93□□□□□ -0.34
SMAD4-211ENST00000590499 TLE2Q04725 743 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 PPP2R5BQ15173 497 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 RTN1Q16799 776 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 ARHGEF16Q5VV41 709 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 SYNE3Q6ZMZ3 975 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 Q6ZUG5 572 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 ANKRD33Q7Z3H0 272 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 IL31RAQ8NI17 732 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 GLT1D1Q96MS3 346 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 AP5M1Q9H0R1 490 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 PDLIM7Q9NR12 457 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 SEC63Q9UGP8 760 aaKnown RBP12.93□□□□□ -0.34
SMAD4-211ENST00000590499 MYH7BA7E2Y1 1941 aa12.93□□□□□ -0.34
SMAD4-211ENST00000590499 hCG_1642624A0A1W2PR95 340 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 GOLGA8AA7E2F4 631 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 GOLGA8BA8MQT2 603 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 MEIS2O14770 477 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 ZMYND10O75800 440 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 EIF3JO75822 258 aaKnown RBP12.92□□□□□ -0.34
SMAD4-211ENST00000590499 PSMA5P28066 241 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 CDC27P30260 824 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 BMP8BP34820 402 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 CDK7P50613 346 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 EVCP57679 992 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 APOBRQ0VD83 1088 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 TTLL4Q14679 1199 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 PGM5Q15124 567 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 STXBP2Q15833 593 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 CXCL17Q6UXB2 119 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 VSIG10LQ86VR7 867 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 CCDC82Q8N4S0 544 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 SLC43A3Q8NBI5 491 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 COPS5Q92905 334 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 BRF1Q92994 677 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 TOX2Q96NM4 488 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 TM6SF1Q9BZW5 370 aa12.92□□□□□ -0.34
SMAD4-211ENST00000590499 FCF1Q9Y324 198 aaKnown RBP12.92□□□□□ -0.34
SMAD4-211ENST00000590499 GRIN2DO15399 1336 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 A0A0U1RQG5 324 aaPredicted RBP12.91□□□□□ -0.34
SMAD4-211ENST00000590499 A0A1W2PPC1 479 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 TRIM43BA6NCK2 446 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 CABYRO75952 493 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 TXNP10599 105 aaKnown RBP12.91□□□□□ -0.34
SMAD4-211ENST00000590499 BRICD5Q6PL45 260 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 RUFY3Q7L099 469 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 SH3RF1Q7Z6J0 888 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 FAM160A2Q8N612 972 aaPredicted RBP12.91□□□□□ -0.34
SMAD4-211ENST00000590499 OR6J1Q8NGC5 347 aa12.91□□□□□ -0.34
SMAD4-211ENST00000590499 TRIM43Q96BQ3 446 aaPredicted RBP12.91□□□□□ -0.34
SMAD4-211ENST00000590499 A6NJR5 290 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 ARVCFO00192 962 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 ZEB2O60315 1214 aa12.9□□□□□ -0.34
SMAD4-211ENST00000590499 PQBP1O60828 265 aaKnown RBP12.9□□□□□ -0.34
SMAD4-211ENST00000590499 CPT1AP50416 773 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms