RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RETREG2Q8NC44 543 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 CAGE1Q8TC20 777 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 GPRASP2Q96D09 838 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 MLXIPQ9HAP2 919 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 DDX49Q9Y6V7 483 aaKnown RBP12.05□□□□□ -0.48
LIG3-212ENST00000590181 GRIN2DO15399 1336 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 NID2Q14112 1375 aa12.05□□□□□ -0.48
LIG3-212ENST00000590181 PIEZO1Q92508 2521 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 MEIS2O14770 477 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 RPLP2P05387 115 aaKnown RBP12.04□□□□□ -0.48
LIG3-212ENST00000590181 MMP3P08254 477 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 GNAT1P11488 350 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 HOXA13P31271 388 aaPredicted RBP12.04□□□□□ -0.48
LIG3-212ENST00000590181 HOXD11P31277 338 aaPredicted RBP12.04□□□□□ -0.48
LIG3-212ENST00000590181 AP3B2Q13367 1082 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 METTL7BQ6UX53 244 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 FCHSD1Q86WN1 690 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 AFG1LQ8WV93 481 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 MYL10Q9BUA6 226 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 RIC8AQ9NPQ8 531 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 BARHL2Q9NY43 387 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 SNX14Q9Y5W7 946 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 CYP46A1Q9Y6A2 500 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 KAT6AQ92794 2004 aa12.04□□□□□ -0.48
LIG3-212ENST00000590181 MUC6Q6W4X9 2439 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 KLF18A0A0U1RQI7 1052 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 RFXAPO00287 272 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 NOP56O00567 594 aaKnown RBP12.03□□□□□ -0.48
LIG3-212ENST00000590181 RGS20O76081 388 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 ARIH2O95376 493 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 PLEKHA8P1O95397 391 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 F2P00734 622 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 RPS6KB1P23443 525 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 GNA11P29992 359 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 METAP2P50579 478 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIG3-212ENST00000590181 ANAPC15P60006 121 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 AKAP17AQ02040 695 aaKnown RBP12.03□□□□□ -0.48
LIG3-212ENST00000590181 ADCK5Q3MIX3 580 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 RUFY3Q7L099 469 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 DEFB128Q7Z7B8 93 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 C7orf31Q8N865 590 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 TET1Q8NFU7 2136 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 BICD2Q8TD16 824 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 AFAP1L1Q8TED9 768 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 SPATA33Q96N06 139 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 JAKMIP1Q96N16 626 aaKnown RBP12.03□□□□□ -0.48
LIG3-212ENST00000590181 CERS4Q9HA82 394 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 ZSWIM6Q9HCJ5 1215 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 NOD1Q9Y239 953 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 MTCH2Q9Y6C9 303 aa12.03□□□□□ -0.48
LIG3-212ENST00000590181 TRIP12Q14669 1992 aaPredicted RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 ESYT2A0FGR8 921 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 EPOPA6NHQ4 379 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 GOLGA8AA7E2F4 631 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 GOLGA8BA8MQT2 603 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 HAS3O00219 553 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 PRPF3O43395 683 aaKnown RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 CAND2O75155 1236 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 GGPS1O95749 300 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 CYP2C9P11712 490 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 ACTN1P12814 892 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 MRPS9P82933 396 aaKnown RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 RBL2Q08999 1139 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 FUT2Q10981 343 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 CPLX2Q6PUV4 134 aaKnown RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 Q6ZUG5 572 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 NIPA1Q7RTP0 329 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 HEATR3Q7Z4Q2 680 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 VWCEQ96DN2 955 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 ZNF274Q96GC6 653 aaPredicted RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 SLC9A7Q96T83 725 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 SH3GLB2Q9NR46 395 aa12.02□□□□□ -0.49
LIG3-212ENST00000590181 TRMT13Q9NUP7 481 aaKnown RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 ZNF215Q9UL58 517 aaPredicted RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 V9GY48 417 aaPredicted RBP12.02□□□□□ -0.49
LIG3-212ENST00000590181 EFCAB14O75071 495 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 ADCY7P51828 1080 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 NAPAP54920 295 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 PTK7Q13308 1070 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 ANKRD1Q15327 319 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 PTGISQ16647 500 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 PFKFB3Q16875 520 aaPredicted RBP12.01□□□□□ -0.49
LIG3-212ENST00000590181 FAM47CQ5HY64 1035 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 TMEM63BQ5T3F8 832 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 KRT40Q6A162 431 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 USP17L6PQ6QN14 398 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 TRIM22Q8IYM9 498 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 CCDC148Q8NFR7 591 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 PHOSPHO2Q8TCD6 241 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 ARNTL2Q8WYA1 636 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 COPS5Q92905 334 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 LRFN3Q9BTN0 628 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 RNF26Q9BY78 433 aaPredicted RBP12.01□□□□□ -0.49
LIG3-212ENST00000590181 LRRC2Q9BYS8 371 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 C22orf23Q9BZE7 217 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 EPHX3Q9H6B9 360 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 C6orf50Q9HD87 102 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 GTF2IRD1Q9UHL9 959 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 BRPF3Q9ULD4 1205 aa12.01□□□□□ -0.49
LIG3-212ENST00000590181 COG5Q9UP83 839 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms