RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 TTC9BQ8N6N2 239 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 ZNF428Q96B54 188 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 TMEM168Q9H0V1 697 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 SMOC1Q9H4F8 434 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 GPR27Q9NS67 375 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 PPP4R1LQ9P1A2 415 aa6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 R3HCC1Q9Y3T6 440 aaKnown RBP6.62□□□□□ -1.35
SMCHD1-208ENST00000583344 LAMTOR5O43504 91 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 DDR2Q16832 855 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 GLB1LQ6UWU2 654 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 ANKS3Q6ZW76 656 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 PROSER1Q86XN7 944 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 PHOSPHO1Q8TCT1 267 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 TMEM209Q96SK2 561 aa6.61□□□□□ -1.35
SMCHD1-208ENST00000583344 KRIT1O00522 736 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 MATN3O15232 486 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 TRMT10BQ6PF06 316 aaKnown RBP6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 KCNT2Q6UVM3 1135 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 CHST13Q8NET6 341 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 IGDCC4Q8TDY8 1250 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 C1QTNF3Q9BXJ4 246 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 SLC6A20Q9NP91 592 aa6.6□□□□□ -1.35
SMCHD1-208ENST00000583344 MAFKO60675 156 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 LTFP02788 710 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 PKN3Q6P5Z2 889 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 PLEKHH3Q7Z736 793 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 CLEC4DQ8WXI8 215 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 WRNIP1Q96S55 665 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 AARSD1Q9BTE6 412 aaKnown RBP6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 ARHGEF4Q9NR80 690 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 FTSJ1Q9UET6 329 aa6.59□□□□□ -1.35
SMCHD1-208ENST00000583344 BLACEA4D250 179 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 PRODHO43272 600 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 CYP7B1O75881 506 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 COL6A1P12109 1028 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 COL6A2P12110 1019 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 GRK2P25098 689 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 GRK3P35626 688 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 HSP90AA2PQ14568 343 aaPredicted RBP6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 ICAM4Q14773 271 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 SURF1Q15526 300 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 NTRK3Q16288 839 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 CYP4F22Q6NT55 531 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 KBTBD2Q8IY47 623 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 TTLL11Q8NHH1 800 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 KCNJ15Q99712 375 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 PTPN18Q99952 460 aa6.58□□□□□ -1.36
SMCHD1-208ENST00000583344 C1QTNF3-AMACRE9PGA6 284 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 GPR42O15529 346 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 KLF4O43474 513 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 ZXDAP98168 799 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 TUSC3Q13454 348 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 YOD1Q5VVQ6 348 aaPredicted RBP6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 VASNQ6EMK4 673 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 LBX2Q6XYB7 198 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 OTOP3Q7RTS5 596 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 DTX3Q8N9I9 347 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 NUDT10Q8NFP7 164 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 DVL3Q92997 716 aaPredicted RBP6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 OSBP2Q969R2 916 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 NUDT11Q96G61 164 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 HSPBP1Q9NZL4 362 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 ZDHHC9Q9Y397 364 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 TELO2Q9Y4R8 837 aa6.57□□□□□ -1.36
SMCHD1-208ENST00000583344 NPEPPSL1A6NEC2 478 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 NKRFO15226 690 aaKnown RBP eCLIP6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 B4GALT4O60513 344 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 EPHB4P54760 987 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 NFATC3Q12968 1075 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 RSPO2Q6UXX9 243 aaPredicted RBP6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 ARHGEF18Q6ZSZ5 1173 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 TRIM48Q8IWZ4 208 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 KLHL36Q8N4N3 616 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 UHMK1Q8TAS1 419 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 DCAF4Q8WV16 495 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 SGSM3Q96HU1 749 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 JADE2Q9NQC1 790 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 DLL4Q9NR61 685 aa6.56□□□□□ -1.36
SMCHD1-208ENST00000583344 FGFR1P11362 822 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 GNAT1P11488 350 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 PABPC1P11940 636 aaKnown RBP6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 GLRBP48167 497 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 PPP2CBP62714 309 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 PPP2CAP67775 309 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 CDSNQ15517 529 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 KIZQ2M2Z5 673 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 PAN2Q504Q3 1202 aaKnown RBP6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 SPRED1Q7Z699 444 aa6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 BARX1Q9HBU1 254 aaPredicted RBP6.55□□□□□ -1.36
SMCHD1-208ENST00000583344 AKAP8O43823 692 aaKnown RBP6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 KLHL18O94889 574 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 CKMP06732 381 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 FAHP16930 419 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 SKIDA1Q1XH10 827 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 NSMFQ6X4W1 530 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 CIR1Q86X95 450 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 SH3RF3Q8TEJ3 882 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 KISS1RQ969F8 398 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 GMLQ99445 158 aa6.54□□□□□ -1.36
SMCHD1-208ENST00000583344 CD248Q9HCU0 757 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms