RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 HLA-DOAP06340 250 aa12□□□□□ -0.49
SS18-221ENST00000582448 TARSP26639 723 aaKnown RBP12□□□□□ -0.49
SS18-221ENST00000582448 SCNN1AP37088 669 aa12□□□□□ -0.49
SS18-221ENST00000582448 ZMYM1Q5SVZ6 1142 aa12□□□□□ -0.49
SS18-221ENST00000582448 C20orf204Q6ZNR8 217 aa12□□□□□ -0.49
SS18-221ENST00000582448 MICALL1Q8N3F8 863 aa12□□□□□ -0.49
SS18-221ENST00000582448 MAP4K1Q92918 833 aa12□□□□□ -0.49
SS18-221ENST00000582448 IL17RAQ96F46 866 aa12□□□□□ -0.49
SS18-221ENST00000582448 DNAJB12Q9NXW2 375 aaKnown RBP12□□□□□ -0.49
SS18-221ENST00000582448 FLRT1Q9NZU1 646 aa12□□□□□ -0.49
SS18-221ENST00000582448 SEPT3Q9UH03 358 aa12□□□□□ -0.49
SS18-221ENST00000582448 ZBTB21Q9ULJ3 1066 aa12□□□□□ -0.49
SS18-221ENST00000582448 SLC6A14Q9UN76 642 aa12□□□□□ -0.49
SS18-221ENST00000582448 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
SS18-221ENST00000582448 IDH1O75874 414 aaKnown RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 DYNLL1P63167 89 aaKnown RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 RAB3GAP1Q15042 981 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 ANO1Q5XXA6 986 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 GTF3C2Q8WUA4 911 aaPredicted RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 APPBP2Q92624 585 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 PLVAPQ9BX97 442 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 IL25Q9H293 177 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 SLKQ9H2G2 1235 aaPredicted RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 PRDM5Q9NQX1 630 aaPredicted RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 DDX20Q9UHI6 824 aaKnown RBP11.99□□□□□ -0.49
SS18-221ENST00000582448 CTNNA3Q9UI47 895 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 ATP11BQ9Y2G3 1177 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 SNX14Q9Y5W7 946 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 FLT1P17948 1338 aa11.99□□□□□ -0.49
SS18-221ENST00000582448 CNMDO75829 334 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 SASH3O75995 380 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 CYP2C19P33261 490 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 USP5P45974 858 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 RTP1P59025 263 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 CCNA1P78396 465 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 PTH1RQ03431 593 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 GJC2Q5T442 439 aaPredicted RBP11.98□□□□□ -0.49
SS18-221ENST00000582448 SLC9C2Q5TAH2 1124 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 CREB3L3Q68CJ9 461 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 ADGRA1Q86SQ6 560 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 RGL4Q8IZJ4 473 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 NPLOC4Q8TAT6 608 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 DSCC1Q9BVC3 393 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 TM6SF1Q9BZW5 370 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 ANTXR1Q9H6X2 564 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 RABGAP1Q9Y3P9 1069 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 CYP46A1Q9Y6A2 500 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 IVNS1ABPQ9Y6Y0 642 aa11.98□□□□□ -0.49
SS18-221ENST00000582448 PLXNB2O15031 1838 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 LOC285556D6RIA3 1793 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 COL2A1P02458 1487 aaPredicted RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 CARNS1A5YM72 827 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 PIK3R2O00459 728 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 CYP2E1P05181 493 aaPredicted RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 CYP7A1P22680 504 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 BRD2P25440 801 aaKnown RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 NECTIN1Q15223 517 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 UBE3CQ15386 1083 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 SHHQ15465 462 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 FAM109BQ6ICB4 259 aaPredicted RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 DPP9Q86TI2 863 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 ZNF589Q86UQ0 364 aaPredicted RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 CMTR1Q8N1G2 835 aaKnown RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 LPAR1Q92633 364 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 JAKMIP1Q96N16 626 aaKnown RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 CDX2Q99626 313 aaPredicted RBP11.97□□□□□ -0.49
SS18-221ENST00000582448 GINM1Q9NU53 330 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 CHMP5Q9NZZ3 219 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 NAGPAQ9UK23 515 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 KCNMB2Q9Y691 235 aa11.97□□□□□ -0.49
SS18-221ENST00000582448 SLC15A5A6NIM6 579 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 SLC27A2O14975 620 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 CASTP20810 708 aaKnown RBP11.96□□□□□ -0.49
SS18-221ENST00000582448 ADD2P35612 726 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 ANKRD1Q15327 319 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 CATSPERGQ6ZRH7 1159 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 METTL16Q86W50 562 aaKnown RBP11.96□□□□□ -0.49
SS18-221ENST00000582448 MIGA1Q8NAN2 632 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 ACER1Q8TDN7 264 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 KCNB2Q92953 911 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 PRDM6Q9NQX0 595 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 BTBD7Q9P203 1132 aa11.96□□□□□ -0.49
SS18-221ENST00000582448 ATAD5Q96QE3 1844 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 ZBTB42B2RXF5 422 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 DNM1LO00429 736 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 MSCO60682 206 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 IGSF3O75054 1194 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 MAP3K6O95382 1288 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 HMGB1P09429 215 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 CERKLQ49MI3 558 aaPredicted RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 C9orf50Q5SZB4 431 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 VPS53Q5VIR6 699 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 TMED8Q6PL24 325 aaPredicted RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 BLOC1S2Q6QNY1 142 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 SLC39A5Q6ZMH5 540 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 CCDC129Q6ZRS4 1044 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 ALYREFQ86V81 257 aaKnown RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 TRPV1Q8NER1 839 aa11.95□□□□□ -0.5
SS18-221ENST00000582448 MAFAQ8NHW3 353 aaPredicted RBP11.95□□□□□ -0.5
SS18-221ENST00000582448 BADQ92934 168 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms