RNA–Protein interactions for RNA: ENST00000578329.1

PPP4R1-209, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 3

Gene PPP4R1, Length 350 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-209	ENST00000578329	ZNF654	Q8IZM8	581 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	DBF4B	Q8NFT6	615 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	PHOSPHO2	Q8TCD6	241 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	AFAP1L1	Q8TED9	768 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	GDPD5	Q8WTR4	605 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ATXN2L	Q8WWM7	1075 aa	Known RBP	5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	PIBF1	Q8WXW3	757 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	TCEANC2	Q96MN5	208 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	SLC9A7	Q96T83	725 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	C17orf80	Q9BSJ5	609 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ESYT1	Q9BSJ8	1104 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	UBAC1	Q9BSL1	405 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	SPZ1	Q9BXG8	430 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CNNM2	Q9H8M5	875 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	EHMT1	Q9H9B1	1298 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	AGO3	Q9H9G7	860 aa	Known RBP	5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	SLC28A3	Q9HAS3	691 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	SETD4	Q9NVD3	440 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	RTEL1	Q9NZ71	1219 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	THEG	Q9P2T0	379 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MSRA	Q9UJ68	235 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	UBIAD1	Q9Y5Z9	338 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MRVI1	Q9Y6F6	885 aa		5.17	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MUC6	Q6W4X9	2439 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	TTC3	P53804	2025 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	KIAA1671	Q9BY89	1806 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MBLAC1	A4D2B0	266 aa	Predicted RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ZBBX	A8MT70	800 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ZBTB42	B2RXF5	422 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329		H3BRB1	525 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	TNFRSF10A	O00220	468 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	HIP1	O00291	1037 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	DHX15	O43143	795 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	PRC1	O43663	620 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	BAIAP3	O94812	1187 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CCNE2	O96020	404 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CPA1	P15085	419 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ATP4A	P20648	1035 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CAST	P20810	708 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	IGFBP4	P22692	258 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CDC27	P30260	824 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	LTBR	P36941	435 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	NT5C2	P49902	561 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MFAP1	P55081	439 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CHMP4BP1	P59074	171 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ITGB3BP	Q13352	177 aa	Predicted RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	LAMC2	Q13753	1193 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	DGKD	Q16760	1214 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	UBE2S	Q16763	222 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CCDC178	Q5BJE1	867 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	FAM26D	Q5JW98	314 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	PCNX4	Q63HM2	1172 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CREB3L3	Q68CJ9	461 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CNKSR3	Q6P9H4	555 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	TMTC3	Q6ZXV5	915 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CYFIP1	Q7L576	1253 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MCF2L2	Q86YR7	1114 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	DHX37	Q8IY37	1157 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	RPUSD2	Q8IZ73	545 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CAGE1	Q8TC20	777 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	LMBR1	Q8WVP7	490 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	ARNTL2	Q8WYA1	636 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	KCNB2	Q92953	911 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	SPATA33	Q96N06	139 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MAP3K14	Q99558	947 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	EPHX3	Q9H6B9	360 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	TUT1	Q9H6E5	874 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	MAP3K20	Q9NYL2	800 aa	Known RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CTNNA3	Q9UI47	895 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	PNMA2	Q9UL42	364 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329		U3KPZ7	1027 aa	Predicted RBP	5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	LOXHD1	Q8IVV2	1947 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	CNTNAP5	Q8WYK1	1306 aa		5.16	□□□□□ -1.58
PPP4R1-209	ENST00000578329	NLRC5	Q86WI3	1866 aa		5.15	□□□□□ -1.58
PPP4R1-209	ENST00000578329	IGLV3-22	A0A075B6J6	115 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	ABHD14A-ACY1	A0A1B0GW23	586 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	POTEB3	A0JP26	581 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	GCOM1	H8Y6P7	765 aa	Predicted RBP	5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	DTNB	O60941	627 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	CTSH	P09668	335 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	POLR2M	P0CAP2	368 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	AR	P10275	920 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	TGFB3	P10600	412 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	DNAJB1	P25685	340 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	SMARCA1	P28370	1054 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	CCND2	P30279	289 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	LIFR	P42702	1097 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	CLK2	P49760	499 aa	Known RBP	5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	MRPS5	P82675	430 aa	Known RBP	5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	DLX2	Q07687	328 aa	Predicted RBP	5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	BFSP2	Q13515	415 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	LPIN1	Q14693	890 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	WTAP	Q15007	396 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	PKN1	Q16512	942 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	WWC2	Q6AWC2	1192 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	FAM117B	Q6P1L5	589 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	APOA5	Q6Q788	366 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	POTEB	Q6S5H4	581 aa		5.15	□□□□□ -1.59
PPP4R1-209	ENST00000578329	METTL7B	Q6UX53	244 aa		5.15	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms