RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 C7orf43Q8WVR3 580 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 CCDC42Q96M95 316 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 FUT8Q9BYC5 575 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 UBXN6Q9BZV1 441 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 TDRD3Q9H7E2 651 aaKnown RBP11.17□□□□□ -0.62
VPS53-220ENST00000576149 MMRN2Q9H8L6 949 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 ARHGAP20Q9P2F6 1191 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 ZNF219Q9P2Y4 722 aaPredicted RBP11.17□□□□□ -0.62
VPS53-220ENST00000576149 COL4A3BPQ9Y5P4 624 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 FRMD3A2A2Y4 597 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 ENC1O14682 589 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 ZNF263O14978 683 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 FOSP01100 380 aaPredicted RBP11.17□□□□□ -0.62
VPS53-220ENST00000576149 ATP1A1P05023 1023 aaKnown RBP11.17□□□□□ -0.62
VPS53-220ENST00000576149 PLEKP08567 350 aaPredicted RBP11.17□□□□□ -0.62
VPS53-220ENST00000576149 BMP3P12645 472 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 STAT3P40763 770 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 SNAP25P60880 206 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 JAG1P78504 1218 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 CYP27A1Q02318 531 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 AOC3Q16853 763 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 LONRF2Q1L5Z9 754 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 NCAPH2Q6IBW4 605 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 BTNL9Q6UXG8 535 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 GPBP1Q86WP2 473 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 CNKSR1Q969H4 720 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 LENG9Q96B70 501 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 CEP63Q96MT8 703 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 PNKPQ96T60 521 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 FGFBP2Q9BYJ0 223 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 EDEM3Q9BZQ6 932 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 SLX4Q8IY92 1834 aa11.17□□□□□ -0.62
VPS53-220ENST00000576149 NPHP3-ACAD11A0A0J9YXS1 232 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 TRAF5O00463 557 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 LCA5LO95447 670 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 GH2P01242 217 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 CHRNA5P30532 468 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 SREBF1P36956 1147 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 SLC12A3P55017 1021 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 KIF5AQ12840 1032 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 SPA17Q15506 151 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 PRR16Q569H4 304 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 ARSHQ5FYA8 562 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 RBM26Q5T8P6 1007 aaKnown RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 HAUS3Q68CZ6 603 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 BAP1Q92560 729 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 TSGA10Q9BZW7 698 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 HDAC6Q9UBN7 1215 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 SAR1BQ9Y6B6 198 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 DUSP10Q9Y6W6 482 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 COL2A1P02458 1487 aaPredicted RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 PITPNM2Q9BZ72 1349 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 SPDYE3A6NKU9 549 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 GNA14O95837 355 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 MARSP56192 900 aaKnown RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 KCNMA1Q12791 1236 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 RRP1BQ14684 758 aaKnown RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 USH1GQ495M9 461 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 HERC4Q5GLZ8 1057 aaPredicted RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 ARHGAP27Q6ZUM4 889 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 KRT26Q7Z3Y9 468 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 CATSPER3Q86XQ3 398 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 NOA1Q8NC60 698 aaKnown RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 SCFD1Q8WVM8 642 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 PRMT6Q96LA8 375 aaPredicted RBP11.16□□□□□ -0.62
VPS53-220ENST00000576149 KCTD10Q9H3F6 313 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 TBC1D7Q9P0N9 293 aa11.16□□□□□ -0.62
VPS53-220ENST00000576149 ANO9A1A5B4 782 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 POTEFA5A3E0 1075 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 LRRC53A6NM62 1247 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 FAM86B1E9PN63 330 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 MAFGO15525 162 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 KIF20AO95235 890 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 TUBBP07437 444 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 FAM86B2P0C5J1 330 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 POTEIP0CG38 1075 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 ERCC3P19447 782 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 RPA1P27694 616 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 CIITAP33076 1130 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 KIF11P52732 1056 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 FAM193AP78312 1265 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 IKQ13123 557 aaPredicted RBP11.15□□□□□ -0.62
VPS53-220ENST00000576149 BEND6Q5SZJ8 279 aaPredicted RBP11.15□□□□□ -0.62
VPS53-220ENST00000576149 POTEGQ6S5H5 508 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 POTEEQ6S8J3 1075 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 RRAGAQ7L523 313 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 ZC3H3Q8IXZ2 948 aaKnown RBP11.15□□□□□ -0.62
VPS53-220ENST00000576149 ERMNQ8TAM6 284 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 FAM20AQ96MK3 541 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 EMILIN3Q9NT22 766 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 SYNPO2Q9UMS6 1093 aa11.15□□□□□ -0.62
VPS53-220ENST00000576149 A0A1W2PRG0 241 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 MAP2K7O14733 419 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 OPLAHO14841 1288 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 RHOXF2BP0C7M4 288 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 SPATA31C1P0DKV0 1188 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 EIF4A3P38919 411 aaKnown RBP11.15□□□□□ -0.63
VPS53-220ENST00000576149 CACNB1Q02641 598 aaPredicted RBP11.15□□□□□ -0.63
VPS53-220ENST00000576149 CCDC40Q4G0X9 1142 aa11.15□□□□□ -0.63
VPS53-220ENST00000576149 PDXDC1Q6P996 788 aa11.15□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms