RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	TPP2	P29144	1249 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	GRK3	P35626	688 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	IREB2	P48200	963 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SARS	P49591	514 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ALDH5A1	P51649	535 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SRSF11	Q05519	484 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	LSAMP	Q13449	338 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	BIRC3	Q13489	604 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ZNF267	Q14586	743 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MAPRE1	Q15691	268 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	LONRF1	Q17RB8	773 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ATAT1	Q5SQI0	421 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SFRP5	Q5T4F7	317 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	RCSD1	Q6JBY9	416 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	IGF2-AS	Q6U949	168 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	CRTC3	Q6UUV7	619 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	EP400NL	Q6ZTU2	488 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	CCDC149	Q6ZUS6	474 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	PCGF5	Q86SE9	256 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	GRAMD1C	Q8IYS0	662 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	FMR1NB	Q8N0W7	255 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ZNF655	Q8N720	491 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	KIAA1958	Q8N8K9	716 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	TEX19	Q8NA77	164 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	DTWD2	Q8NBA8	298 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	DAGLB	Q8NCG7	672 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ZBTB34	Q8NCN2	500 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	TGFBRAP1	Q8WUH2	860 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	HPS3	Q969F9	1004 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ACD	Q96AP0	544 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	TMEM169	Q96HH4	297 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022		Q96M66	194 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	CCDC138	Q96M89	665 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	FAM193B	Q96PV7	902 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	PSMG3-AS1	Q96PY0	264 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MMP19	Q99542	508 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MAP3K14	Q99558	947 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ELF4	Q99607	663 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SELENOO	Q9BVL4	669 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	YIPF2	Q9BWQ6	316 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SLC12A9	Q9BXP2	914 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	COL25A1	Q9BXS0	654 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ZDHHC5	Q9C0B5	715 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MRPL18	Q9H0U6	180 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SEMA6C	Q9H3T2	930 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	ZHX3	Q9H4I2	956 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	PCIF1	Q9H4Z3	704 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	SP110	Q9HB58	689 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	CCM2L	Q9NUG4	571 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	DNAJC28	Q9NX36	388 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MAP3K20	Q9NYL2	800 aa	Known RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	KCNG1	Q9UIX4	513 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	GTF2A1L	Q9UNN4	478 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	IPP	Q9Y573	584 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	PCDHA11	Q9Y5I1	949 aa		2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	TIMM13	Q9Y5L4	95 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	MORC2	Q9Y6X9	1032 aa	Predicted RBP	2.59	□□□□□ -1.99
CHD3-217	ENST00000574022	CNTNAP4	Q9C0A0	1308 aa		2.59	□□□□□ -2
CHD3-217	ENST00000574022		A0A0A0MRY4	1105 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SSU72P8	A0A1W2PR75	194 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SHISA3	A0PJX4	238 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022		A6NNZ2	444 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	RBAK-RBAKDN	I3L0D1	243 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SLC26A4	O43511	780 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	GAS2	O43903	313 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	KDM1A	O60341	852 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PQBP1	O60828	265 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	HIP1R	O75146	1068 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	EOMES	O95936	686 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	HRG	P04196	525 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	CYP17A1	P05093	508 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	HSP90AA1	P07900	732 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	COL6A1	P12109	1028 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	SLC5A1	P13866	664 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	CD40	P25942	277 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	MAN1A1	P33908	653 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	BMP8B	P34820	402 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ECE1	P42892	770 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	KIR3DL1	P43629	444 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	RENBP	P51606	427 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	KIF11	P52732	1056 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ADK	P55263	362 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	JAM2	P57087	298 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	RPL11	P62913	178 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	FAM193A	P78312	1265 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	IRF9	Q00978	393 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	LAPTM4A	Q15012	233 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	PDCD1	Q15116	288 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	GPR19	Q15760	415 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	INF2	Q27J81	1249 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	KIAA0753	Q2KHM9	967 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	TOR2A	Q5JU69	321 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	RNFT1	Q5M7Z0	435 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ANGEL2	Q5VTE6	544 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	CDPF1	Q6NVV7	123 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	XRRA1	Q6P2D8	792 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	LILRA6	Q6PI73	481 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ARHGAP36	Q6ZRI8	547 aa		2.58	□□□□□ -2
CHD3-217	ENST00000574022	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	2.58	□□□□□ -2
CHD3-217	ENST00000574022	MYLK4	Q86YV6	388 aa	Predicted RBP	2.58	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms