RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PLEKHG4Q58EX7 1191 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 ANKRD54Q6NXT1 300 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 LLGL2Q6P1M3 1020 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 MIGA1Q8NAN2 632 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 KLHL23Q8NBE8 558 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 SLF1Q9BQI6 1058 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 GPR108Q9NPR9 543 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 DLGAP2Q9P1A6 1054 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 FREM2Q5SZK8 3169 aa8.35□□□□□ -1.07
CHD3-213ENST00000571249 COL4A3Q01955 1670 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 NARSO43776 548 aaKnown RBP8.34□□□□□ -1.07
CHD3-213ENST00000571249 KALRNO60229 2985 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 TOP3BO95985 862 aaKnown RBP8.34□□□□□ -1.07
CHD3-213ENST00000571249 AKR1B1P15121 316 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 CYP7A1P22680 504 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 TBC1D8BQ0IIM8 1120 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 KCNC3Q14003 757 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 LPAL2Q16609 132 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 PPP1R15BQ5SWA1 713 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 C19orf48Q6RUI8 117 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 MICAL1Q8TDZ2 1067 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 SECISBP2LQ93073 1101 aaKnown RBP8.34□□□□□ -1.07
CHD3-213ENST00000571249 ANKFY1Q9P2R3 1169 aa8.34□□□□□ -1.07
CHD3-213ENST00000571249 FOCADQ5VW36 1801 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 MYH1P12882 1939 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 USP17L12C9JPN9 530 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 USP17L21D6R901 530 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 DPYSL4O14531 572 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 ATP2A1O14983 1001 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 LRRN2O75325 713 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 CFHP08603 1231 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 UQCRFS1P1P0C7P4 283 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 HOXD8P13378 290 aaPredicted RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 EEF2P13639 858 aaKnown RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 BTG3Q14201 252 aaPredicted RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 HIC1Q14526 733 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 MCM6Q14566 821 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 DUSP6Q16828 381 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 RGS22Q8NE09 1264 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 CHST13Q8NET6 341 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 FEZF2Q8TBJ5 459 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 KAT2BQ92831 832 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 KIF12Q96FN5 646 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 PLVAPQ9BX97 442 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 TBC1D17Q9HA65 648 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 RC3H2Q9HBD1 1191 aaKnown RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 COPRSQ9NQ92 184 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 A1CFQ9NQ94 594 aaKnown RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 HDAC6Q9UBN7 1215 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 FBXO40Q9UH90 709 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 RWDD3Q9Y3V2 267 aa8.33□□□□□ -1.08
CHD3-213ENST00000571249 CTDP1Q9Y5B0 961 aaPredicted RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 MRPL42Q9Y6G3 142 aaKnown RBP8.33□□□□□ -1.08
CHD3-213ENST00000571249 ADGRA3Q8IWK6 1321 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 MYO9AB2RTY4 2548 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 RSPH10B2B2RC85 870 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 SPTLC1O15269 473 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 ZBED4O75132 1171 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 CYP2E1P05181 493 aaPredicted RBP8.32□□□□□ -1.08
CHD3-213ENST00000571249 MMP3P08254 477 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 RSPH10BP0C881 870 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 KANK3Q6NY19 840 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 TMEM184AQ6ZMB5 413 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 PDZD3Q86UT5 571 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 SESTD1Q86VW0 696 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 ZDHHC14Q8IZN3 488 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 ATRIPQ8WXE1 791 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 MAP4K1Q92918 833 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 P2RX5Q93086 422 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 DYNLL2Q96FJ2 89 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 VTA1Q9NP79 307 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 PIH1D3Q9NQM4 214 aaKnown RBP8.32□□□□□ -1.08
CHD3-213ENST00000571249 GTF2IRD1Q9UHL9 959 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 CA14Q9ULX7 337 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 COG6Q9Y2V7 657 aa8.32□□□□□ -1.08
CHD3-213ENST00000571249 SPTAN1Q13813 2472 aaKnown RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 TM4SF5O14894 197 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 CYP2D6P10635 497 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 THPOP40225 353 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 ERVFC1P60507 584 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 CSTF1Q05048 431 aaKnown RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 PTK7Q13308 1070 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 TDGQ13569 410 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 BRDTQ58F21 947 aaPredicted RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 TDRD5Q8NAT2 981 aaKnown RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 ZCCHC14Q8WYQ9 949 aaKnown RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 SEPT8Q92599 483 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 KIFC2Q96AC6 838 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 ZNF689Q96CS4 500 aaPredicted RBP8.31□□□□□ -1.08
CHD3-213ENST00000571249 EPC1Q9H2F5 836 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 SLC38A10Q9HBR0 1119 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 MCM9Q9NXL9 1143 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 DUSP12Q9UNI6 340 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 SIT1Q9Y3P8 196 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 DOPEY1Q5JWR5 2465 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 ADAMTS20P59510 1910 aa8.31□□□□□ -1.08
CHD3-213ENST00000571249 EMSYQ7Z589 1322 aa8.3□□□□□ -1.08
CHD3-213ENST00000571249 SDK1Q7Z5N4 2213 aa8.3□□□□□ -1.08
CHD3-213ENST00000571249 RBM47A0AV96 593 aaKnown RBP8.3□□□□□ -1.08
CHD3-213ENST00000571249 KPNA6O60684 536 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms