RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 IPO5O00410 1097 aaKnown RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 MAFGO15525 162 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 CCNT1O60563 726 aaKnown RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 DUSP11O75319 330 aaKnown RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 MYCP01106 439 aaPredicted RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 ATP2B1P20020 1258 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 GJA9P57773 515 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 ATP2C1P98194 919 aaPredicted RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 TTLL4Q14679 1199 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 HSDL1Q3SXM5 330 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 RILPL1Q5EBL4 403 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 CELF3Q5SZQ8 465 aaKnown RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 PCYT2Q99447 389 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 HMX1Q9NP08 348 aaPredicted RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 PKD2L1Q9P0L9 805 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 DDX25Q9UHL0 483 aaKnown RBP10.54□□□□□ -0.72
VPS35-211ENST00000569950 OGDHLQ9ULD0 1010 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 FAM184BQ9ULE4 1060 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 NFASCO94856 1347 aa10.54□□□□□ -0.72
VPS35-211ENST00000569950 A6NJR5 290 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 B4DLN1 442 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 EML1O00423 815 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 TBX3O15119 743 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 SORBS3O60504 671 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 ABCB7O75027 752 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 ATG7O95352 703 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 GGPS1O95749 300 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 PGK1P00558 417 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 GJB1P08034 283 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 CST5P28325 142 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 MCM7P33993 719 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 NASPP49321 788 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 SETQ01105 290 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 GRIN1Q05586 938 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 PTGDRQ13258 359 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 ORC2Q13416 577 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 GNPTABQ3T906 1256 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 KCNV1Q6PIU1 500 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 METTL7BQ6UX53 244 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 CYFIP1Q7L576 1253 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 UBE2Q1Q7Z7E8 422 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 TLK2Q86UE8 772 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 NLRX1Q86UT6 975 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 DEFB118Q96PH6 123 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 MPHOSPH6Q99547 160 aaKnown RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 RIT2Q99578 217 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 RNF208Q9H0X6 261 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 ZSCAN16Q9H4T2 348 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 CIZ1Q9ULV3 898 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 Q9Y3F1 56 aa10.53□□□□□ -0.72
VPS35-211ENST00000569950 MORC2Q9Y6X9 1032 aaPredicted RBP10.53□□□□□ -0.72
VPS35-211ENST00000569950 IGKV6D-21A0A0A0MT36 114 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 NKRFO15226 690 aaKnown RBP eCLIP10.52□□□□□ -0.73
VPS35-211ENST00000569950 NEMFO60524 1076 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 SGPL1O95470 568 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 GH1P01241 217 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 MMP3P08254 477 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 PDIA4P13667 645 aaKnown RBP10.52□□□□□ -0.73
VPS35-211ENST00000569950 CNGA1P29973 690 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 ZNF76P36508 570 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 GJA8P48165 433 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 BEX3Q00994 111 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 DNM1Q05193 864 aaKnown RBP10.52□□□□□ -0.73
VPS35-211ENST00000569950 LRRC41Q15345 812 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 SF3A1Q15459 793 aaKnown RBP10.52□□□□□ -0.73
VPS35-211ENST00000569950 U2AF1L4Q8WU68 220 aaKnown RBP10.52□□□□□ -0.73
VPS35-211ENST00000569950 AFG1LQ8WV93 481 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 KAT2BQ92831 832 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 ABHD8Q96I13 439 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 FAM20AQ96MK3 541 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 GPR20Q99678 358 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 ZNF577Q9BSK1 485 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 C16orf70Q9BSU1 422 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 UNC45AQ9H3U1 944 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 POLR3EQ9NVU0 708 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 GRIN2DO15399 1336 aa10.52□□□□□ -0.73
VPS35-211ENST00000569950 DYNC1LI2O43237 492 aaPredicted RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 LGR5O75473 907 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 STBD1O95210 358 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 OR52Z1P0C646 297 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 COL6A1P12109 1028 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 ACTR2P61160 394 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 PPP2R5CQ13362 524 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 GNL2Q13823 731 aaKnown RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 NEDD9Q14511 834 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 SLC39A14Q15043 492 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 FOXD4L6Q3SYB3 417 aaPredicted RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 ABHD15Q6UXT9 468 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 FOXD4L3Q6VB84 417 aaPredicted RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 IGSF22Q8N9C0 903 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 LINC00301Q8NCQ3 95 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 PPTC7Q8NI37 304 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 CDHR1Q96JP9 859 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 MMTAG2Q9BU76 263 aaKnown RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 XPNPEP3Q9NQH7 507 aa10.51□□□□□ -0.73
VPS35-211ENST00000569950 WRAP73Q9P2S5 460 aaPredicted RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 TFIP11Q9UBB9 837 aaKnown RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 FBXO2Q9UK22 296 aaPredicted RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 NOL7Q9UMY1 257 aaKnown RBP10.51□□□□□ -0.73
VPS35-211ENST00000569950 CEP290O15078 2479 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms