RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 VMACQ2NL98 169 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 MTERF2Q49AM1 385 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 TCERG1LQ5VWI1 586 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 ICE2Q659A1 982 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 SASS6Q6UVJ0 657 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 SPATC1Q76KD6 591 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 ZNF771Q7L3S4 317 aaPredicted RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 ZSCAN30Q86W11 494 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 DCP2Q8IU60 420 aaKnown RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 IGDCC3Q8IVU1 814 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 LRRC47Q8N1G4 583 aaKnown RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 NETO2Q8NC67 525 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 RCBTB1Q8NDN9 531 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 ST13P5Q8NFI4 369 aaPredicted RBP3.89□□□□□ -1.79
VPS35-208ENST00000568612 ZBTB9Q96C00 473 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 TMEM169Q96HH4 297 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 CLDND1Q9NY35 253 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 POGKQ9P215 609 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 ANAPC4Q9UJX5 808 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 KNSTRNQ9Y448 316 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 PCDHA5Q9Y5H7 936 aa3.89□□□□□ -1.79
VPS35-208ENST00000568612 TRAV20A0A0B4J274 112 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 PDPK1O15530 556 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 DLX3O60479 287 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 CT47B1P0C2W7 299 aaPredicted RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 NCAM1P13591 858 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 PAX7P23759 505 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 PMLP29590 882 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 CD151P48509 253 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 GTF2A2P52657 109 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 SSRP1Q08945 709 aaKnown RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 MAP4K2Q12851 820 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 IFRD2Q12894 506 aaPredicted RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 SLC9A5Q14940 896 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 SF3A1Q15459 793 aaKnown RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 ACBD5Q5T8D3 534 aaPredicted RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 LRCH2Q5VUJ6 765 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 DENND5AQ6IQ26 1287 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 NSMFQ6X4W1 530 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 LCNL1Q6ZST4 164 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 C1QL4Q86Z23 238 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 CILP2Q8IUL8 1156 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 TMEM151BQ8IW70 566 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 KREMEN2Q8NCW0 462 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 PLEKHO2Q8TD55 490 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 PWWP2AQ96N64 755 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 CDC6Q99741 560 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 YIPF4Q9BSR8 244 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 MYH16Q9H6N6 1097 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 SUDS3Q9H7L9 328 aaPredicted RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 SIRPGQ9P1W8 387 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 RPS6KL1Q9Y6S9 549 aa3.88□□□□□ -1.79
VPS35-208ENST00000568612 IBTKQ9P2D0 1353 aaPredicted RBP3.88□□□□□ -1.79
VPS35-208ENST00000568612 BLACEA4D250 179 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 ARNTLO00327 626 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 IRS4O14654 1257 aaPredicted RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 DHX16O60231 1041 aaKnown RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 ZBTB7AO95365 584 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 IPO7O95373 1038 aaKnown RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 ASGR2P07307 311 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 PABPC1P11940 636 aaKnown RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 ATF2P15336 505 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 BMP7P18075 431 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 CCT2P78371 535 aaKnown RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 FOXO4P98177 505 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 TRDNQ13061 729 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 LSAMPQ13449 338 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 CDC37Q16543 378 aaPredicted RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 HS1BP3Q53T59 392 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 SLC35F1Q5T1Q4 408 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 MROH9Q5TGP6 573 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 YOD1Q5VVQ6 348 aaPredicted RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 MILR1Q7Z6M3 343 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 NLRP10Q86W26 655 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 FAM129CQ86XR2 697 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 TMEFF1Q8IYR6 380 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 NLGN1Q8N2Q7 840 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 ERCC4Q92889 916 aaPredicted RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 DDX11Q96FC9 970 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 TSPAN17Q96FV3 270 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 SRPK1Q96SB4 655 aaKnown RBP3.87□□□□□ -1.79
VPS35-208ENST00000568612 PHF20Q9BVI0 1012 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 SPATA9Q9BWV2 254 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 PANK2Q9BZ23 570 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 ARHGEF4Q9NR80 690 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 FBXL7Q9UJT9 491 aa3.87□□□□□ -1.79
VPS35-208ENST00000568612 KRTAP4-8A0A0G2JLE6 195 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 CCDC196A0A1B0GTZ2 297 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 ANKRD18BA2A2Z9 1011 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 SGSM2O43147 1006 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 MSCO60682 206 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 ZRANB2O95218 330 aaKnown RBP eCLIP3.86□□□□□ -1.79
VPS35-208ENST00000568612 FGFR1P11362 822 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 CCDC173Q0VFZ6 552 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 FOXD4Q12950 439 aaPredicted RBP3.86□□□□□ -1.79
VPS35-208ENST00000568612 BIRC2Q13490 618 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 RASGRF1Q13972 1273 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 KRTAP19-4Q3LI73 84 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 KCNT2Q6UVM3 1135 aa3.86□□□□□ -1.79
VPS35-208ENST00000568612 SPOCD1Q6ZMY3 1216 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms