RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 SLFN14P0C7P3 912 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 PLCG1P19174 1290 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 ICAM3P32942 547 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 MDM2Q00987 491 aaPredicted RBP15.26■□□□□ 0.03
VPS39-206ENST00000562662 TMEM119Q4V9L6 283 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 RRAGBQ5VZM2 374 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 KRT79Q5XKE5 535 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 NCAPH2Q6IBW4 605 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 LRSAM1Q6UWE0 723 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 REM2Q8IYK8 340 aaPredicted RBP15.26■□□□□ 0.03
VPS39-206ENST00000562662 CALML4Q96GE6 196 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 FUCA2Q9BTY2 467 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 UNC45AQ9H3U1 944 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 PKD2L1Q9P0L9 805 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 IVNS1ABPQ9Y6Y0 642 aa15.26■□□□□ 0.03
VPS39-206ENST00000562662 SLC15A5A6NIM6 579 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 B4DLN1 442 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 SPATA31C2B4DYI2 1134 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 KCNA2P16389 499 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 STAT6P42226 847 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 PDE4DQ08499 809 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 ECM1Q16610 540 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 GNPTABQ3T906 1256 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 KANK3Q6NY19 840 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 RASSF8Q8NHQ8 419 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 CDHR1Q96JP9 859 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 PLIN2Q99541 437 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 MPHOSPH6Q99547 160 aaKnown RBP15.25■□□□□ 0.03
VPS39-206ENST00000562662 TBC1D22BQ9NU19 505 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 STK24Q9Y6E0 443 aa15.25■□□□□ 0.03
VPS39-206ENST00000562662 MYH9P35579 1960 aaKnown RBP15.25■□□□□ 0.03
VPS39-206ENST00000562662 KDM3AQ9Y4C1 1321 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 MED24O75448 989 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 PRR29P0C7W0 189 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 CCT6AP40227 531 aaKnown RBP15.24■□□□□ 0.03
VPS39-206ENST00000562662 PNOCQ13519 176 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 POSTNQ15063 836 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 ZRSR1Q15695 479 aaKnown RBP15.24■□□□□ 0.03
VPS39-206ENST00000562662 MORN1Q5T089 497 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 HAUS3Q68CZ6 603 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 ZNF467Q7Z7K2 595 aaPredicted RBP15.24■□□□□ 0.03
VPS39-206ENST00000562662 GRAMD1CQ8IYS0 662 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 CEP57L1Q8IYX8 460 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 ERMNQ8TAM6 284 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 ERCC4Q92889 916 aaPredicted RBP15.24■□□□□ 0.03
VPS39-206ENST00000562662 PAGE5Q96GU1 130 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 MTRQ99707 1265 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 CUEDC2Q9H467 287 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 BLOC1S4Q9NUP1 217 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 KIAA1468Q9P260 1216 aa15.24■□□□□ 0.03
VPS39-206ENST00000562662 NFASCO94856 1347 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 POTEB3A0JP26 581 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 ASB14A6NK59 587 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 DDX39AO00148 427 aaKnown RBP15.23■□□□□ 0.03
VPS39-206ENST00000562662 CHMP2AO43633 222 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 SPATA31C1P0DKV0 1188 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 RPA1P27694 616 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 VEGFBP49765 207 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 EPHA7Q15375 998 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 POTEBQ6S5H4 581 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 KCNK18Q7Z418 384 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 GAS2L3Q86XJ1 694 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 CDK5RAP3Q96JB5 506 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 EIF2AK1Q9BQI3 630 aaKnown RBP15.23■□□□□ 0.03
VPS39-206ENST00000562662 POLR3CQ9BUI4 534 aaPredicted RBP15.23■□□□□ 0.03
VPS39-206ENST00000562662 NT5C3AQ9H0P0 336 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 MAGEF1Q9HAY2 307 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 STK17AQ9UEE5 414 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 TUBE1Q9UJT0 475 aa15.23■□□□□ 0.03
VPS39-206ENST00000562662 DIS3Q9Y2L1 958 aaKnown RBP15.23■□□□□ 0.03
VPS39-206ENST00000562662 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.22■□□□□ 0.03
VPS39-206ENST00000562662 CTGFP29279 349 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 AFMP43652 599 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 HTRA3P83110 453 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 SP2Q02086 613 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 MAMDC4Q6UXC1 1216 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 SEPT14Q6ZU15 432 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 ARMCX2Q7L311 632 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 CATSPER3Q86XQ3 398 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 NPLOC4Q8TAT6 608 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 USP6NLQ92738 828 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 CCDC34Q96HJ3 373 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 MAML3Q96JK9 1138 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 HSD17B14Q9BPX1 270 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 CFHR5Q9BXR6 569 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 KBTBD4Q9NVX7 518 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 HOOK1Q9UJC3 728 aaKnown RBP15.22■□□□□ 0.03
VPS39-206ENST00000562662 ARID2Q68CP9 1835 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 CASP8AP2Q9UKL3 1982 aa15.22■□□□□ 0.03
VPS39-206ENST00000562662 GTPBP6O43824 516 aaPredicted RBP15.21■□□□□ 0.03
VPS39-206ENST00000562662 CCNE2O96020 404 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 MAP2K2P36507 400 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 KRT76Q01546 638 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 TYRO3Q06418 890 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 DPYDQ12882 1025 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 MAP2K5Q13163 448 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 GSE1Q14687 1217 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 NT5DC1Q5TFE4 455 aa15.21■□□□□ 0.03
VPS39-206ENST00000562662 ZNF746Q6NUN9 644 aaPredicted RBP15.21■□□□□ 0.03
VPS39-206ENST00000562662 EEPD1Q7L9B9 569 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms