RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 HHIPL2Q6UWX4 724 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 LIPIQ6XZB0 460 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 DDX46Q7L014 1031 aaKnown RBP6.74□□□□□ -1.33
VPS13C-210ENST00000561258 FGD2Q7Z6J4 655 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 AHI1Q8N157 1196 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 ZNF526Q8TF50 670 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-210ENST00000561258 POLR3GLQ9BT43 218 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 TNPO3Q9Y5L0 923 aaKnown RBP6.74□□□□□ -1.33
VPS13C-210ENST00000561258 FHOD1Q9Y613 1164 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 PMF1-BGLAPU3KQ54 211 aa6.74□□□□□ -1.33
VPS13C-210ENST00000561258 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-210ENST00000561258 ALDH1L1O75891 902 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 KCNH1O95259 989 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 NPTXRO95502 500 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 ASLP04424 464 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 CYBBP04839 570 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 TACR1P25103 407 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 GUCY2FP51841 1108 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 PRR5P85299 388 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 MAP4K2Q12851 820 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 TTF1Q15361 905 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-210ENST00000561258 SF1Q15637 639 aaKnown RBP6.73□□□□□ -1.33
VPS13C-210ENST00000561258 NTRK3Q16288 839 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 CWF19L1Q69YN2 538 aaKnown RBP6.73□□□□□ -1.33
VPS13C-210ENST00000561258 GTF2IRD2BQ6EKJ0 949 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 PKN3Q6P5Z2 889 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 GTF2IRD2Q86UP8 949 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 LEO1Q8WVC0 666 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-210ENST00000561258 BRF1Q92994 677 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 SCLYQ96I15 445 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 MTFR1LQ9H019 292 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 NKX2-4Q9H2Z4 354 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 USP40Q9NVE5 1235 aa6.73□□□□□ -1.33
VPS13C-210ENST00000561258 CCDC194A0A1B0GVG4 234 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 A0A1W2PQJ5 194 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 BLACEA4D250 179 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 F8W031 263 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-210ENST00000561258 FGF10O15520 208 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-210ENST00000561258 SRGAP3O43295 1099 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 SCG5P05408 212 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 CPEP16870 476 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 MC3RP41968 323 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 EPHB1P54762 984 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 GRB10Q13322 594 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 ZNF460Q14592 562 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 PCBP1Q15365 356 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS13C-210ENST00000561258 DHCR24Q15392 516 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 NECAB2Q7Z6G3 386 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 KCTD13Q8WZ19 329 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 PTPRN2Q92932 1015 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 C1orf159Q96HA4 380 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 ASPSCR1Q9BZE9 553 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 PDLIM7Q9NR12 457 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 TCEAL9Q9UHQ7 104 aa6.72□□□□□ -1.33
VPS13C-210ENST00000561258 ARID4BQ4LE39 1312 aaPredicted RBP6.72□□□□□ -1.33
VPS13C-210ENST00000561258 PHLDB1Q86UU1 1377 aa6.71□□□□□ -1.33
VPS13C-210ENST00000561258 K7ESM1 405 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 IGFALSP35858 605 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 TBX4P57082 545 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 HTRA3P83110 453 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 CYP4F3Q08477 520 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 STRN3Q13033 797 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 SEPT7Q16181 437 aaKnown RBP6.71□□□□□ -1.34
VPS13C-210ENST00000561258 NFE2Q16621 373 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-210ENST00000561258 SLC35F1Q5T1Q4 408 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 LHFPL2Q6ZUX7 228 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 MAMDC2Q7Z304 686 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-210ENST00000561258 SAPCD2Q86UD0 394 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 TMEM145Q8NBT3 493 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 C8orf48Q96LL4 319 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 CCDC140Q96MF4 163 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 NOL6Q9H6R4 1146 aaKnown RBP6.71□□□□□ -1.34
VPS13C-210ENST00000561258 GABBR1Q9UBS5 961 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 DIS3Q9Y2L1 958 aaKnown RBP6.71□□□□□ -1.34
VPS13C-210ENST00000561258 DUSP10Q9Y6W6 482 aa6.71□□□□□ -1.34
VPS13C-210ENST00000561258 TCRBV16S1A1N1A0A5B0 115 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 OPA1O60313 960 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 KATNA1O75449 491 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 MAP4K4O95819 1239 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-210ENST00000561258 HOXC12P31275 282 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 DLX2Q07687 328 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-210ENST00000561258 MCL1Q07820 350 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 NOL9Q5SY16 702 aaKnown RBP6.7□□□□□ -1.34
VPS13C-210ENST00000561258 FIBCD1Q8N539 461 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 FCRL3Q96P31 734 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-210ENST00000561258 GPR20Q99678 358 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 BCAS3Q9H6U6 928 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 RXFP1Q9HBX9 757 aa6.7□□□□□ -1.34
VPS13C-210ENST00000561258 DBR1Q9UK59 544 aaKnown RBP6.7□□□□□ -1.34
VPS13C-210ENST00000561258 GPR39O43194 453 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 KPNA6O60684 536 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 RASGRP1O95267 797 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 ASGR2P07307 311 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 SNRPB2P08579 225 aaKnown RBP6.69□□□□□ -1.34
VPS13C-210ENST00000561258 NEK4P51957 841 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 PPP2R5DQ14738 602 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 STAT4Q14765 748 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 RNF219Q5W0B1 726 aaPredicted RBP6.69□□□□□ -1.34
VPS13C-210ENST00000561258 KRTAP5-3Q6L8H2 238 aa6.69□□□□□ -1.34
VPS13C-210ENST00000561258 CYP2R1Q6VVX0 501 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms