RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 EXOC1LA0A1B0GW35 172 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 MMP1P03956 469 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 ESRRAP11474 423 aaPredicted RBP14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 CCDC24Q8N4L8 307 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 SRPRBQ9Y5M8 271 aaKnown RBP14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 SCINQ9Y6U3 715 aa14.27□□□□□ -0.12
CSPG4P11-201ENST00000560634 FAM170AA1A519 330 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 ARHGEF37A1IGU5 675 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 RFX1P22670 979 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 PSPC1Q8WXF1 523 aaKnown RBP14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 ZNF577Q9BSK1 485 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 NOVA2Q9UNW9 492 aaKnown RBP14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 DIS3Q9Y2L1 958 aaKnown RBP14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 KRT10P13645 584 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 PHKA1P46020 1223 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 SURF1Q15526 300 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 TTLL7Q6ZT98 887 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 PGBD1Q96JS3 809 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 NHEJ1Q9H9Q4 299 aaPredicted RBP14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 KMT5AQ9NQR1 393 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 SLC12A6Q9UHW9 1150 aa14.27□□□□□ -0.13
CSPG4P11-201ENST00000560634 MAPK13O15264 365 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 TTLL1O95922 423 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 RHOT2Q8IXI1 618 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 CCNYQ8ND76 341 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 UPF3AQ9H1J1 476 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 EMILIN3Q9NT22 766 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ATG3Q9NT62 314 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 MAP3K15Q6ZN16 1313 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 IQANK1A0A1B0GTG1 560 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ZMYND10O75800 440 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 MXI1P50539 228 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 IL1RL1Q01638 556 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 THOC5Q13769 683 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ARL6IP4Q66PJ3 421 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 KANSL2Q9H9L4 492 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 SLC38A10Q9HBR0 1119 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ZNF804BA4D1E1 1349 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 KIF21AQ7Z4S6 1674 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 PODXLO00592 558 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 CLCN6P51797 869 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ART3Q13508 389 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 SNX1Q13596 522 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 BZW1Q7L1Q6 419 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 DCLK2Q8N568 766 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ZMYND12Q9H0C1 365 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ABCC2Q92887 1545 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 ATP10DQ9P241 1426 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 LMNAP02545 664 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 CA4P22748 312 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 BASP1P80723 227 aaKnown RBP14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 DR1Q01658 176 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 CENPUQ71F23 418 aa14.26□□□□□ -0.13
CSPG4P11-201ENST00000560634 PRPF3O43395 683 aaKnown RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 XPAP23025 273 aaPredicted RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 LIFRP42702 1097 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 IFRD2Q12894 506 aaPredicted RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 DARS2Q6PI48 645 aaKnown RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 TMC4Q7Z404 712 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 KIAA0825Q8IV33 1275 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 FAM133AQ8N9E0 248 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 ACRBPQ8NEB7 543 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 TBCKQ8TEA7 893 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 CNKSR1Q969H4 720 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 FGD4Q96M96 766 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 NDST4Q9H3R1 872 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 GCNT4Q9P109 453 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 PCDHA13Q9Y5I0 950 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 FTCDO95954 541 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 CASP2P42575 452 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 SYNJ2BP-COX16A0A087WUM0 186 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 C2orf54Q08AI8 447 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 MYLK4Q86YV6 388 aaPredicted RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 FAM96AQ9H5X1 160 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 COX16Q9P0S2 106 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 GOLGA8SH3BPF8 625 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 LRRN2O75325 713 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 DCTN3O75935 186 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 GFPT2O94808 682 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 MOCS3O95396 460 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 KCTD2Q14681 263 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 SNX25Q9H3E2 840 aa14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 ADD3Q9UEY8 706 aaKnown RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 SEPT9Q9UHD8 586 aaPredicted RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 CPSF3Q9UKF6 684 aaKnown RBP14.25□□□□□ -0.13
CSPG4P11-201ENST00000560634 WDR17Q8IZU2 1322 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 F8W8V4 182 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 GSTA4O15217 222 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 ATP5HO75947 161 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 NBPF9Q3BBW0 867 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 ALKBH5Q6P6C2 394 aaKnown RBP14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 SESTD1Q86VW0 696 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 CALR3Q96L12 384 aaKnown RBP14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 PARVGQ9HBI0 331 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 INO80B-WBP1J3KQ70 363 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 KRT37O76014 449 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 RWDD2BP57060 319 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 LRRC41Q15345 812 aa14.24□□□□□ -0.13
CSPG4P11-201ENST00000560634 FAM133BQ5BKY9 247 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms