RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	MEFV	O15553	781 aa	Predicted RBP	5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	CHGB	P05060	677 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	TGM1	P22735	817 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	NRN1L	Q496H8	165 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	ACBD5	Q5T8D3	534 aa	Predicted RBP	5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	ZNF575	Q86XF7	245 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	RCBTB1	Q8NDN9	531 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	EDA	Q92838	391 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	AJUBA	Q96IF1	538 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	SHD	Q96IW2	340 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	LMF1	Q96S06	567 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	BACH2	Q9BYV9	841 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	DLL4	Q9NR61	685 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	MYOT	Q9UBF9	498 aa		5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	ZFR2	Q9UPR6	939 aa	Known RBP	5.03	□□□□□ -1.6
SPG11-222	ENST00000560435	SCG5	P05408	212 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	HOXC12	P31275	282 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	DPT	Q07507	201 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	LSAMP	Q13449	338 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	IGFL4	Q6B9Z1	124 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	PROSER1	Q86XN7	944 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	IFNL2	Q8IZJ0	200 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	ZNF654	Q8IZM8	581 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	DTX3	Q8N9I9	347 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	KREMEN2	Q8NCW0	462 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	TTLL11	Q8NHH1	800 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	RASGRP4	Q8TDF6	673 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	BTN2A2	Q8WVV5	523 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	PPP1R14A	Q96A00	147 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	CEP89	Q96ST8	783 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	SMOC1	Q9H4F8	434 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	EPB41L1	Q9H4G0	881 aa		5.02	□□□□□ -1.61
SPG11-222	ENST00000560435	NARS	O43776	548 aa	Known RBP	5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	MAFK	O60675	156 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	DGKI	O75912	1065 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	PDIA4	P13667	645 aa	Known RBP	5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	CSF2RB	P32927	897 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	MCM7	P33993	719 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	PTH1R	Q03431	593 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	NCAPH	Q15003	741 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	SMAD2	Q15796	467 aa	Known RBP	5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	USP39	Q53GS9	565 aa	Known RBP	5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	VASN	Q6EMK4	673 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	CYP4F22	Q6NT55	531 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	REXO1L1P	Q8IX06	675 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	GIMAP8	Q8ND71	665 aa	Predicted RBP	5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	LRRC37B	Q96QE4	947 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	LGR4	Q9BXB1	951 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	RBPJL	Q9UBG7	517 aa		5.01	□□□□□ -1.61
SPG11-222	ENST00000560435	CP	P00450	1065 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	KNG1	P01042	644 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	SNRPB2	P08579	225 aa	Known RBP	5	□□□□□ -1.61
SPG11-222	ENST00000560435	COMT	P21964	271 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	LTBR	P36941	435 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	ECI1	P42126	302 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	GPRASP2	Q96D09	838 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	CHAMP1	Q96JM3	812 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	TRIM8	Q9BZR9	551 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	CSRNP2	Q9H175	543 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	IKZF4	Q9H2S9	585 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	CLDND1	Q9NY35	253 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	ASH2L	Q9UBL3	628 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	PCDHA2	Q9Y5H9	948 aa		5	□□□□□ -1.61
SPG11-222	ENST00000560435	LSM12	Q3MHD2	195 aa	Known RBP	4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	AGBL4	Q5VU57	503 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	GPR155	Q7Z3F1	870 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	TAX1BP1	Q86VP1	789 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	TRIM48	Q8IWZ4	208 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	PPIL6	Q8IXY8	311 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	CCDC140	Q96MF4	163 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	KATNBL1	Q9H079	304 aa		4.99	□□□□□ -1.61
SPG11-222	ENST00000560435	KRIT1	O00522	736 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	TBX1	O43435	398 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	FBXO21	O94952	628 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	LCP1	P13796	627 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	ZNF16	P17020	682 aa	Predicted RBP	4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	PHF19	Q5T6S3	580 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	FUK	Q8N0W3	1084 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	FAM169B	Q8N8A8	192 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	EXTL1	Q92935	676 aa		4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	NEIL1	Q96FI4	390 aa	Predicted RBP	4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	GZF1	Q9H116	711 aa	Predicted RBP	4.98	□□□□□ -1.61
SPG11-222	ENST00000560435	RAD17	O75943	681 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	NASP	P49321	788 aa	Predicted RBP	4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	INHBC	P55103	352 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	USP10	Q14694	798 aa	Known RBP	4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	PRSS53	Q2L4Q9	553 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	ZNF568	Q3ZCX4	644 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	ZNF227	Q86WZ6	799 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	CPLX3	Q8WVH0	158 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	CDIP1	Q9H305	208 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	KCND1	Q9NSA2	647 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435	ZFP69B	Q9UJL9	534 aa		4.97	□□□□□ -1.61
SPG11-222	ENST00000560435		A0A087X1B8	175 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	PLSCR1	O15162	318 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	ITGAV	P06756	1048 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	ACO1	P21399	889 aa	Known RBP	4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	GJA8	P48165	433 aa		4.96	□□□□□ -1.62
SPG11-222	ENST00000560435	GFRA1	P56159	465 aa		4.96	□□□□□ -1.62

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