RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 A0A087WZG4 1122 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 CCDC163A0A0D9SF12 145 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SH3D21A4FU49 640 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 OPA1O60313 960 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 FKTNO75072 461 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SCG5P05408 212 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 PDGFRBP09619 1106 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 MSL3P1P0C860 447 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 JMJD7P0C870 316 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 PLS3P13797 630 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 ATF2P15336 505 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 HOXC12P31275 282 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 KIR2DL1P43626 348 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 KIR2DL2P43627 348 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 ID4P47928 161 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 NEK4P51957 841 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 GABREP78334 506 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 ZNF200P98182 395 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 MAP4K2Q12851 820 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 STRN3Q13033 797 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 GRB10Q13322 594 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 RAB3GAP1Q15042 981 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SLC14A2Q15849 920 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 INF2Q27J81 1249 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 CLEC16AQ2KHT3 1053 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 PLEKHN1Q494U1 663 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 TBC1D10BQ4KMP7 808 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 BRDTQ58F21 947 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 TAF7LQ5H9L4 462 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 CT47A1Q5JQC4 288 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 RTP2Q5QGT7 225 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 POMZP3Q6PJE2 187 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 WAPLQ7Z5K2 1190 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 TTC9BQ8N6N2 239 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 NPLOC4Q8TAT6 608 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 COG1Q8WTW3 980 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 COPS5Q92905 334 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SYTL4Q96C24 671 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 TCTN2Q96GX1 697 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SAMD11Q96NU1 681 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 FCRL3Q96P31 734 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 PHF20Q9BVI0 1012 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 SLC12A9Q9BXP2 914 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 FOXP3Q9BZS1 431 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 MTFR1LQ9H019 292 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 TNFRSF12AQ9NP84 129 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 CYP26B1Q9NR63 512 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 HOMER2Q9NSB8 354 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 MAGEC2Q9UBF1 373 aaPredicted RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 FBXL7Q9UJT9 491 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 KCNH3Q9ULD8 1083 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 DIS3Q9Y2L1 958 aaKnown RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 THRAP3Q9Y2W1 955 aaKnown RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 SF3B6Q9Y3B4 125 aaKnown RBP2.29□□□□□ -2.04
USP3-209ENST00000558925 PCDHA9Q9Y5H5 950 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 PCDHA8Q9Y5H6 950 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 BACE2Q9Y5Z0 518 aa2.29□□□□□ -2.04
USP3-209ENST00000558925 TCRBV16S1A1N1A0A5B0 115 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 C2orf71A6NGG8 1288 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 ZNF891A8MT65 544 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 FADS2P1A8MWK0 482 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 ABLIM1O14639 778 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 AURKAO14965 403 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 KATNA1O75449 491 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 GLRX3O76003 335 aaKnown RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 EYA4O95677 639 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 S100BP04271 92 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 MPOP05164 745 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 GSNP06396 782 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 SYPP08247 313 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 GSTM1P09488 218 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 SRGAP2CP0DJJ0 459 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 VAV1P15498 845 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 KCNA6P17658 529 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 SOX5P35711 763 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 MC3RP41968 323 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 RTP1P59025 263 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 FOXO4P98177 505 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 POU4F1Q01851 419 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 GUCY1A3Q02108 690 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 HSF5Q4G112 596 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 ODR4Q5SWX8 454 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 PIK3R6Q5UE93 754 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 CDCA2Q69YH5 1023 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 CWF19L1Q69YN2 538 aaKnown RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 STYK1Q6J9G0 422 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 CPNE8Q86YQ8 564 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 NXPE1Q8N323 547 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 CRACR2BQ8N4Y2 399 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 DAGLBQ8NCG7 672 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 ATL2Q8NHH9 583 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 JDP2Q8WYK2 163 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 PTPRN2Q92932 1015 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 DVL3Q92997 716 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 SMAD5Q99717 465 aaKnown RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 TRIM8Q9BZR9 551 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 ASCC2Q9H1I8 757 aaPredicted RBP2.28□□□□□ -2.04
USP3-209ENST00000558925 AP5S1Q9NUS5 200 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 PRR13Q9NZ81 148 aa2.28□□□□□ -2.04
USP3-209ENST00000558925 COQ6Q9Y2Z9 468 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms