RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 CYP7A1P22680 504 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 TARSP26639 723 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 SLC19A1P41440 591 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 GUCY2FP51841 1108 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ZNF143P52747 638 aaPredicted RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 FAAP100Q0VG06 881 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 TRDNQ13061 729 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ALX1Q15699 326 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 SPRED3Q2MJR0 410 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 MAP9Q49MG5 647 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 VHLLQ6RSH7 139 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 DZIP1Q86YF9 867 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 AHI1Q8N157 1196 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 LINC00528Q8N1L1 170 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 AFAP1L2Q8N4X5 818 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 MAGEB6Q8N7X4 407 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 RNF217Q8TC41 542 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 FAM163AQ96GL9 167 aaPredicted RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 ZSCAN31Q96LW9 406 aaPredicted RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 FAM227BQ96M60 508 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ANTXR1Q9H6X2 564 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 NCOA5Q9HCD5 579 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 PIH1D3Q9NQM4 214 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 DACH1Q9UI36 760 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ABT1Q9ULW3 272 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 RBM8AQ9Y5S9 174 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 CYP46A1Q9Y6A2 500 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 SPTBN5Q9NRC6 3674 aaKnown RBP5.97□□□□□ -1.45
LDLR-209ENST00000558528 FAM205AQ6ZU69 1335 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 ZNF532Q9HCE3 1301 aa5.97□□□□□ -1.45
LDLR-209ENST00000558528 A0A0D9SFI3 127 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 GOLGA6CA6NDK9 693 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 GOLGA6BA6NDN3 693 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 GSG1L2A8MUP6 293 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 B2RBV5 119 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 GPAA1O43292 621 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ADCY3O60266 1144 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 SUSD5O60279 629 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 APPP05067 770 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 HSP90AA1P07900 732 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 GOLGA6DP0CG33 693 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 HSPD1P10809 573 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 ARNTP27540 789 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 CHRNA5P30532 468 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 NRLP54845 237 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 CHAF1AQ13111 956 aaPredicted RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 SCARF1Q14162 830 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 PCSK7Q16549 785 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 STRIP1Q5VSL9 837 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 CREB3L3Q68CJ9 461 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 TTLL5Q6EMB2 1281 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 MRM1Q6IN84 353 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 CYP4F22Q6NT55 531 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 BLOC1S2Q6QNY1 142 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 PRICKLE2Q7Z3G6 844 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 KRT25Q7Z3Z0 450 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 SULF2Q8IWU5 870 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 MYO1HQ8N1T3 1032 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ASAP3Q8TDY4 903 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 OSBP2Q969R2 916 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 EDC3Q96F86 508 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 NEK1Q96PY6 1258 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 MRPL4Q9BYD3 311 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 CRNKL1Q9BZJ0 848 aaKnown RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 NAPBQ9H115 298 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ALDH8A1Q9H2A2 487 aaPredicted RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 RNF41Q9H4P4 317 aaPredicted RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 TAF1DQ9H5J8 278 aaPredicted RBP5.96□□□□□ -1.46
LDLR-209ENST00000558528 ZNF287Q9HBT7 754 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ARNT2Q9HBZ2 717 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ATP8A2Q9NTI2 1148 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 GOLGA6AQ9NYA3 693 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 POLLQ9UGP5 575 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 SPEF1Q9Y4P9 236 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 ZMYM6O95789 1325 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 MYO3BQ8WXR4 1341 aa5.96□□□□□ -1.46
LDLR-209ENST00000558528 TCRBV5S4A2TA0A5A2 114 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 UPK3BL1B0FP48 263 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 UPK3BL2E5RIL1 263 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 SNAP23O00161 211 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 SLC27A2O14975 620 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 EFSO43281 561 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 AOC2O75106 756 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 DDNO94850 711 aaPredicted RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 B3GALT4O96024 378 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 F11P03951 625 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 CTSOP43234 321 aaPredicted RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 NEK2P51955 445 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 NEK4P51957 841 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 PTH1RQ03431 593 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 MCL1Q07820 350 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 KIAA2012Q0VF49 1180 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 ZRSR2Q15696 482 aaKnown RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 SLC10A6Q3KNW5 377 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 VPS53Q5VIR6 699 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 RNF219Q5W0B1 726 aaPredicted RBP5.95□□□□□ -1.46
LDLR-209ENST00000558528 CHPFQ8IZ52 775 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 TMTC2Q8N394 836 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 BSNDQ8WZ55 320 aa5.95□□□□□ -1.46
LDLR-209ENST00000558528 GAL3ST3Q96A11 431 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms