RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 NONOQ15233 471 aaKnown RBP eCLIP13.6□□□□□ -0.235e-7■□□□□ 10.7
LDLR-205ENST00000557933 PARP10Q53GL7 1025 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 PIK3R5Q8WYR1 880 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 CALML4Q96GE6 196 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 ERGIC2Q96RQ1 377 aa13.6□□□□□ -0.23
LDLR-205ENST00000557933 RGS17Q9UGC6 210 aaPredicted RBP13.6□□□□□ -0.23
LDLR-205ENST00000557933 E9PMD0 336 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 M0R2N6 131 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 SLC16A2P36021 539 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 CFAP221Q4G0U5 840 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 FAM83BQ5T0W9 1011 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 HGSNATQ68CP4 663 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 GJB7Q6PEY0 223 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 CEP57Q86XR8 500 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 MSL3Q8N5Y2 521 aaKnown RBP13.59□□□□□ -0.23
LDLR-205ENST00000557933 UBLCP1Q8WVY7 318 aaPredicted RBP13.59□□□□□ -0.23
LDLR-205ENST00000557933 PNMA5Q96PV4 448 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 CCSER1Q9C0I3 900 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 CHORDC1Q9UHD1 332 aaPredicted RBP13.59□□□□□ -0.23
LDLR-205ENST00000557933 ZNF804BA4D1E1 1349 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 GOLGA8KD6RF30 607 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 TCP1P17987 556 aaKnown RBP13.59□□□□□ -0.23
LDLR-205ENST00000557933 QPCTQ16769 361 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 EP400NLQ6ZTU2 488 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 NEK8Q86SG6 692 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 MDM1Q8TC05 714 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 LARP4BQ92615 738 aaKnown RBP13.59□□□□□ -0.23
LDLR-205ENST00000557933 ANKIB1Q9P2G1 1089 aa13.59□□□□□ -0.23
LDLR-205ENST00000557933 SF3B2Q13435 895 aaKnown RBP13.58□□□□□ -0.24
LDLR-205ENST00000557933 PICALMQ13492 652 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 PRPF4BQ13523 1007 aaKnown RBP13.58□□□□□ -0.24
LDLR-205ENST00000557933 E2F5Q15329 346 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 CALCRLQ16602 461 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 MCTP2Q6DN12 878 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 CNNM4Q6P4Q7 775 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 ZNF473Q8WTR7 871 aaKnown RBP13.58□□□□□ -0.24
LDLR-205ENST00000557933 TSGA10Q9BZW7 698 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 F8W031 263 aaPredicted RBP13.58□□□□□ -0.24
LDLR-205ENST00000557933 MEIS1O00470 390 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 OPLAHO14841 1288 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 ORC4O43929 436 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 STAT3P40763 770 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 ERVK-9P63128 1117 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 MAN2A1Q16706 1144 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 SOGA3Q5TF21 947 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 TCERG1LQ5VWI1 586 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 PDXDC1Q6P996 788 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 FAM114A1Q8IWE2 563 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 CCT8L2Q96SF2 557 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 AMACRQ9UHK6 382 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 GGT7Q9UJ14 662 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 ZNF652Q9Y2D9 606 aa13.58□□□□□ -0.24
LDLR-205ENST00000557933 NOC3LQ8WTT2 800 aaKnown RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 FAM212AQ96EL1 285 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 CCNL1Q9UK58 526 aaPredicted RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 ARAP2Q8WZ64 1704 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 NOL4O94818 638 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 PDHBP11177 359 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 SLC9A1P19634 815 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 EPS15P42566 896 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 DCAF17Q5H9S7 520 aaPredicted RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 TBC1D9BQ66K14 1250 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 CENPPQ6IPU0 288 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 LRRC55Q6ZSA7 311 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 ZSCAN29Q8IWY8 852 aaPredicted RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 IFT20Q8IY31 132 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 REXO1Q8N1G1 1221 aaKnown RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 SCLT1Q96NL6 688 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 PYM1Q9BRP8 204 aaKnown RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 TIAM2Q8IVF5 1701 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 NRXN2Q9P2S2 1712 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 PHF20L1A8MW92 1017 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 SNAP25P60880 206 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 KLHL30Q0D2K2 578 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 UBAP2Q5T6F2 1119 aaKnown RBP13.57□□□□□ -0.24
LDLR-205ENST00000557933 C12orf60Q5U649 245 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 SFMBT2Q5VUG0 894 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 EMBQ6PCB8 327 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 CEP95Q96GE4 821 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 MTA3Q9BTC8 594 aa13.57□□□□□ -0.24
LDLR-205ENST00000557933 GRM4Q14833 912 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 NFIXQ14938 502 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 NLRP14Q86W24 1093 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 IQCKQ8N0W5 287 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 RETREG2Q8NC44 543 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 MYCBPAPQ8TBZ2 947 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 ARPP21Q9UBL0 812 aaPredicted RBP13.56□□□□□ -0.24
LDLR-205ENST00000557933 SEC63Q9UGP8 760 aaKnown RBP13.56□□□□□ -0.24
LDLR-205ENST00000557933 NR2E1Q9Y466 385 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 TLDC2A0PJX2 215 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 GRID2IPA4D2P6 1211 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 DAPK3O43293 454 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 PPP1R37O75864 691 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 CTNNA1P35221 906 aaKnown RBP13.56□□□□□ -0.24
LDLR-205ENST00000557933 RPS8P62241 208 aaKnown RBP13.56□□□□□ -0.24
LDLR-205ENST00000557933 DHX9Q08211 1270 aaKnown RBP13.56□□□□□ -0.24
LDLR-205ENST00000557933 UBE4AQ14139 1066 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 SLC9C1Q4G0N8 1177 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 EYA3Q99504 573 aa13.56□□□□□ -0.24
LDLR-205ENST00000557933 C7orf25Q9BPX7 421 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms