RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 SLC18A3Q16572 532 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 ZCWPW2Q504Y3 356 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 ARFGAP2Q8N6H7 521 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 DYNLL2Q96FJ2 89 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 UBR3Q6ZT12 1888 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 ADRA2BP18089 450 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 CXCR5P32302 372 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 TXKP42681 527 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 IFI16Q16666 785 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 MEI1Q5TIA1 1274 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 MCTP2Q6DN12 878 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 C3orf20Q8ND61 904 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 CCDC43Q96MW1 224 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 EPN3Q9H201 632 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 BMP2KQ9NSY1 1161 aaPredicted RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 SALL4Q9UJQ4 1053 aa17.94■□□□□ 0.46
SHMT2-232ENST00000557487 RTCBQ9Y3I0 505 aaKnown RBP17.94■□□□□ 0.46
SHMT2-232ENST00000557487 IRS2Q9Y4H2 1338 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 NAV1Q8NEY1 1877 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 NCK2O43639 380 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 ANXA13P27216 316 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 NOVP48745 357 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 KCNMA1Q12791 1236 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 FAM83BQ5T0W9 1011 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 PPP1R18Q6NYC8 613 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 C16orf86Q6ZW13 317 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 SH3RF3Q8TEJ3 882 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-232ENST00000557487 INPP4AQ96PE3 977 aaPredicted RBP17.93■□□□□ 0.46
SHMT2-232ENST00000557487 TANGO6Q9C0B7 1094 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 RIOX1Q9H6W3 641 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 EPB41L5Q9HCM4 733 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 AIPL1Q9NZN9 384 aa17.93■□□□□ 0.46
SHMT2-232ENST00000557487 ZBTB7AO95365 584 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 GLI1P08151 1106 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 HSPA9P38646 679 aaKnown RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 CUL1Q13616 776 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 CCDC40Q4G0X9 1142 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 DDX12PQ92771 950 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 HPS3Q969F9 1004 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 ATP6V1G3Q96LB4 118 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 NAP1L4Q99733 375 aaKnown RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 ANKRD65E5RJM6 399 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 NKRFO15226 690 aaKnown RBP eCLIP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 MEFVO15553 781 aaPredicted RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 PALMO75781 387 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 FSBPO95073 299 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 MYBP10242 640 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 CARSP49589 748 aaKnown RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 GUCY2DQ02846 1103 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 PPP4R3AQ6IN85 833 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 PPP4R3CPQ6ZMV5 832 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 CNPY4Q8N129 248 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 SNX29Q8TEQ0 813 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 TAF4BQ92750 862 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 PBKQ96KB5 322 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 EYA3Q99504 573 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 NFU1Q9UMS0 254 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 BZW2Q9Y6E2 419 aaKnown RBP17.92■□□□□ 0.46
SHMT2-232ENST00000557487 KDM3AQ9Y4C1 1321 aa17.92■□□□□ 0.46
SHMT2-232ENST00000557487 GOLGA6L10A6NI86 522 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 ZNF233A6NK53 670 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 BUB1O43683 1085 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 PLCG2P16885 1265 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 NR1D1P20393 614 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 LSP1P33241 339 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 PTGER2P43116 358 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 LIG3P49916 1009 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 ADCY7P51828 1080 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 HYIQ5T013 277 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 TRAPPC3LQ5T215 181 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 OTUD6BQ8N6M0 293 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 CALR3Q96L12 384 aaKnown RBP17.91■□□□□ 0.46
SHMT2-232ENST00000557487 PSMB7Q99436 277 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 SGIP1Q9BQI5 828 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 NT5C3AQ9H0P0 336 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 TMEM59LQ9UK28 342 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 LEMD3Q9Y2U8 911 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 MYH10P35580 1976 aa17.91■□□□□ 0.46
SHMT2-232ENST00000557487 PPP1R37O75864 691 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 NOL4O94818 638 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 GOLGA8HP0CJ92 632 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 PDCLQ13371 301 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 DRP2Q13474 957 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 DYMQ7RTS9 669 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 ZC3H3Q8IXZ2 948 aaKnown RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 ANKRD13CQ8N6S4 541 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 PRPF38AQ8NAV1 312 aaKnown RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 USP38Q8NB14 1042 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 SNED1Q8TER0 1413 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 LRRC45Q96CN5 670 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 ISCUQ9H1K1 167 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TAF1DQ9H5J8 278 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TNRC6CQ9HCJ0 1690 aaKnown RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 PLCB1Q9NQ66 1216 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 BIN2Q9UBW5 565 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-232ENST00000557487 COL24A1Q17RW2 1714 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TRAF5O00463 557 aa17.9■□□□□ 0.46
SHMT2-232ENST00000557487 TLR2O60603 784 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms