RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ISCUQ9H1K1 167 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TAF1DQ9H5J8 278 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TNRC6CQ9HCJ0 1690 aaKnown RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 PLCB1Q9NQ66 1216 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 BIN2Q9UBW5 565 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TRAF5O00463 557 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TLR2O60603 784 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 GCFC2P16383 781 aaKnown RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 CDK8P49336 464 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 COASYQ13057 564 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 PLCB4Q15147 1175 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 ASPRV1Q53RT3 343 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 FAM26FQ5R3K3 315 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TRIM59Q8IWR1 403 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 CCDC65Q8IXS2 484 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 LSM14BQ9BX40 385 aaKnown RBP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 SMARCAL1Q9NZC9 954 aa17.9■□□□□ 0.46
SHMT2-231ENST00000557433 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.9■□□□□ 0.46
SHMT2-231ENST00000557433 TAF1P21675 1872 aa17.89■□□□□ 0.46
SHMT2-231ENST00000557433 MDH1P40925 334 aaKnown RBP17.89■□□□□ 0.45
SHMT2-231ENST00000557433 SETQ01105 290 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-231ENST00000557433 ASIC2Q16515 512 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 PTGISQ16647 500 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 C15orf52Q6ZUT6 534 aaKnown RBP17.89■□□□□ 0.45
SHMT2-231ENST00000557433 TGFBRAP1Q8WUH2 860 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 CASKIN2Q8WXE0 1202 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 IFT81Q8WYA0 676 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 PIK3R5Q8WYR1 880 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 DNAJC19Q96DA6 116 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 MS4A14Q96JA4 679 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 RNPC3Q96LT9 517 aaKnown RBP17.89■□□□□ 0.45
SHMT2-231ENST00000557433 PIGSQ96S52 555 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 EHD4Q9H223 541 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 EHD2Q9NZN4 543 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 ATAD5Q96QE3 1844 aa17.89■□□□□ 0.45
SHMT2-231ENST00000557433 CNTNAP4Q9C0A0 1308 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 KRT14P02533 472 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 KLRC1P26715 233 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 POLR2FP61218 127 aaKnown RBP17.88■□□□□ 0.45
SHMT2-231ENST00000557433 KLHL30Q0D2K2 578 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 KIAA0753Q2KHM9 967 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 EDRF1Q3B7T1 1238 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 ACTRT1Q8TDG2 376 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 KRT12Q99456 494 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 NLRC4Q9NPP4 1024 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 PANK4Q9NVE7 773 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 GEMIN8Q9NWZ8 242 aaKnown RBP17.88■□□□□ 0.45
SHMT2-231ENST00000557433 COL24A1Q17RW2 1714 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 PLIN4Q96Q06 1357 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 BIRC3Q13489 604 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 MTMR3Q13615 1198 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 RPS6KA1Q15418 735 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 SKIDA1Q1XH10 827 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 USP17L2Q6R6M4 530 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 RUFY4Q6ZNE9 571 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 TBC1D5Q92609 795 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 HINFPQ9BQA5 517 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 TMBIM4Q9HC24 238 aa17.88■□□□□ 0.45
SHMT2-231ENST00000557433 COL16A1Q07092 1604 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-231ENST00000557433 CCDC188H7C350 402 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 FAM107AO95990 144 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 FAM153BP0C7A2 387 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 HNRNPH1P31943 449 aaKnown RBP17.87■□□□□ 0.45
SHMT2-231ENST00000557433 USP11P51784 963 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 FAM153CQ494X1 144 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 NAA35Q5VZE5 725 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 ZNF804AQ7Z570 1209 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 CCDC91Q7Z6B0 441 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 SLC44A5Q8NCS7 719 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 KAT2BQ92831 832 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 FAM153AQ9UHL3 310 aa17.87■□□□□ 0.45
SHMT2-231ENST00000557433 SPATA31A1Q5TZJ5 1347 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 BHMG1C9JSJ3 638 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SLC37A4O43826 429 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 FTCDO95954 541 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 IRX3P78415 501 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 ITGB3BPQ13352 177 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SLC4A8Q2Y0W8 1093 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 TPTE2Q6XPS3 522 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SH2D3CQ8N5H7 860 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 ZNF473Q8WTR7 871 aaKnown RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SCFD2Q8WU76 684 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 LMBR1Q8WVP7 490 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 ACSBG1Q96GR2 724 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 CABS1Q96KC9 395 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SETDB2Q96T68 719 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 RTFDC1Q9BY42 306 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 A1CFQ9NQ94 594 aaKnown RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 MTMR7Q9Y216 660 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 SAMM50Q9Y512 469 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 GCOM1H8Y6P7 765 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 MYZAPP0CAP1 466 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 EPS15P42566 896 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 ATP1A2P50993 1020 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 MRPS25P82663 173 aaKnown RBP17.86■□□□□ 0.45
SHMT2-231ENST00000557433 DDR1Q08345 913 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 RAPGEF1Q13905 1077 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 TBC1D9BQ66K14 1250 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 KCTD16Q68DU8 428 aa17.86■□□□□ 0.45
SHMT2-231ENST00000557433 ARMC9Q7Z3E5 817 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms