RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 RCSD1Q6JBY9 416 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 SLC30A10Q6XR72 485 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 AFG1LQ8WV93 481 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 ZKSCAN3Q9BRR0 538 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 OSBPL7Q9BZF2 842 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 IL25Q9H293 177 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 ANO2Q9NQ90 1003 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 HDAC6Q9UBN7 1215 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 ADD3Q9UEY8 706 aaKnown RBP14.51□□□□□ -0.09
SHMT2-230ENST00000557427 CCPG1Q9ULG6 757 aa14.51□□□□□ -0.09
SHMT2-230ENST00000557427 PLIN4Q96Q06 1357 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 ZMYM6O95789 1325 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 VPS13AQ96RL7 3174 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 LOC102724159A0A0B4J2E5 919 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 PRR23AA6NEV1 266 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 GRM6O15303 877 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 MMP3P08254 477 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 ZNF200P98182 395 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-230ENST00000557427 PWP2Q15269 919 aaKnown RBP14.5□□□□□ -0.09
SHMT2-230ENST00000557427 SCFD2Q8WU76 684 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 TOP1MTQ969P6 601 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 MSLNLQ96KJ4 702 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 TMEM47Q9BQJ4 181 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 RNF41Q9H4P4 317 aaPredicted RBP14.5□□□□□ -0.09
SHMT2-230ENST00000557427 CD207Q9UJ71 328 aa14.5□□□□□ -0.09
SHMT2-230ENST00000557427 ICAM1P05362 532 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 TOP1P11387 765 aaKnown RBP14.49□□□□□ -0.09
SHMT2-230ENST00000557427 HSPA4P34932 840 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 SIGLEC14Q08ET2 396 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 PTK7Q13308 1070 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 ADAM15Q13444 863 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 CBX2Q14781 532 aaPredicted RBP14.49□□□□□ -0.09
SHMT2-230ENST00000557427 IMMTQ16891 758 aaKnown RBP14.49□□□□□ -0.09
SHMT2-230ENST00000557427 CCDC96Q2M329 555 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 CCDC62Q6P9F0 684 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 CLEC4DQ8WXI8 215 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 ESR2Q92731 530 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 YME1L1Q96TA2 773 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 DSCC1Q9BVC3 393 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 GPCPD1Q9NPB8 672 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 TCP11L1Q9NUJ3 509 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 TRPC6Q9Y210 931 aa14.49□□□□□ -0.09
SHMT2-230ENST00000557427 NEDD4P46934 1319 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-230ENST00000557427 KDM4AO75164 1064 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 EYA4O95677 639 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 PDGFBP01127 241 aaPredicted RBP14.48□□□□□ -0.09
SHMT2-230ENST00000557427 CALML3P27482 149 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 SLC16A2P36021 539 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 ID4P47928 161 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 MCM2P49736 904 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 ARHGAP1Q07960 439 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 PDE4DQ08499 809 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 PLEKHG4Q58EX7 1191 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 TTBK2Q6IQ55 1244 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 LSG1Q9H089 658 aaKnown RBP14.48□□□□□ -0.09
SHMT2-230ENST00000557427 IRF2BPLQ9H1B7 796 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 RANBP17Q9H2T7 1088 aaKnown RBP14.48□□□□□ -0.09
SHMT2-230ENST00000557427 IGFLR1Q9H665 355 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 CLEC1BQ9P126 229 aa14.48□□□□□ -0.09
SHMT2-230ENST00000557427 FRMPD2Q68DX3 1309 aaPredicted RBP14.47□□□□□ -0.09
SHMT2-230ENST00000557427 PTPDC1A2A3K4 754 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 B4E1Z4 1266 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 C5orf67F2Z3F1 127 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 KRT37O76014 449 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 UPP2O95045 317 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 PCP11498 1178 aaKnown RBP14.47□□□□□ -0.09
SHMT2-230ENST00000557427 NOVP48745 357 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 PTH1RQ03431 593 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 CAMK1Q14012 370 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 LY6KQ17RY6 165 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 SPRYD3Q8NCJ5 442 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 DCAF4Q8WV16 495 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 TTC14Q96N46 770 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 ALG1Q9BT22 464 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 DNAH14Q0VDD8 3507 aa14.47□□□□□ -0.09
SHMT2-230ENST00000557427 RALGAPA2Q2PPJ7 1873 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 HAS3O00219 553 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 NBL1P41271 181 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 PSEN2P49810 448 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 C7orf31Q8N865 590 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 ZSWIM5Q9P217 1185 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 GVINP1Q7Z2Y8 2422 aa14.46□□□□□ -0.09
SHMT2-230ENST00000557427 CACNA1BQ00975 2339 aa14.46□□□□□ -0.1
SHMT2-230ENST00000557427 MED19A0JLT2 244 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-230ENST00000557427 CSPG5O95196 566 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 HSP90AA1P07900 732 aaKnown RBP14.45□□□□□ -0.1
SHMT2-230ENST00000557427 CASTP20810 708 aaKnown RBP14.45□□□□□ -0.1
SHMT2-230ENST00000557427 CTNNB1P35222 781 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 BMPR1AP36894 532 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 RPS6P62753 249 aaKnown RBP14.45□□□□□ -0.1
SHMT2-230ENST00000557427 RNF207Q6ZRF8 634 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 CHST3Q7LGC8 479 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 IQCA1Q86XH1 822 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 SMRP1Q8NCR6 262 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 ZSCAN10Q96SZ4 725 aaPredicted RBP14.45□□□□□ -0.1
SHMT2-230ENST00000557427 LMAN2LQ9H0V9 348 aa14.45□□□□□ -0.1
SHMT2-230ENST00000557427 EMSYQ7Z589 1322 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 RSPH10B2B2RC85 870 aa14.44□□□□□ -0.1
SHMT2-230ENST00000557427 GALR2O43603 387 aaPredicted RBP14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms