RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GPS2Q13227 327 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 TCP11X2Q5H9J9 407 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 MUM1L1Q5H9M0 696 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 SH3D19Q5HYK7 790 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 LRCH2Q5VUJ6 765 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 CCDC84Q86UT8 332 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-229ENST00000557348 TXLNBQ8N3L3 684 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 LRRC15Q8TF66 581 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 IQCDQ96DY2 449 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 TSG101Q99816 390 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 VAV3Q9UKW4 847 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 KIAA1024Q9UPX6 916 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT2-229ENST00000557348 ZHX2Q9Y6X8 837 aa14.06□□□□□ -0.16
SHMT2-229ENST00000557348 A0A0U1RQG5 324 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-229ENST00000557348 KCNJ18B7U540 433 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 MEIS1O00470 390 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 VWA5AO00534 786 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 GAS7O60861 476 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 PLA2G4BP0C869 781 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 EHHADHQ08426 723 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 KCNJ12Q14500 433 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 PCNX4Q63HM2 1172 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 NCAPH2Q6IBW4 605 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.05□□□□□ -0.168e-7■■□□□ 11.7
SHMT2-229ENST00000557348 ZC3H15Q8WU90 426 aaKnown RBP14.05□□□□□ -0.16
SHMT2-229ENST00000557348 CLEC4DQ8WXI8 215 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 AGBL1Q96MI9 1066 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 MXRA8Q9BRK3 442 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 HOXC10Q9NYD6 342 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 KCND2Q9NZV8 630 aa14.05□□□□□ -0.16
SHMT2-229ENST00000557348 PSMD10O75832 226 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 ALAS1P13196 640 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 NF2P35240 595 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CCZ1BP86790 482 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CCZ1P86791 482 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 LRMPQ12912 555 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 TBX2Q13207 712 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 COG2Q14746 738 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CENPPQ6IPU0 288 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 TTI2Q6NXR4 508 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 SAMD1Q6SPF0 538 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 USP50Q70EL3 339 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 APTXQ7Z2E3 356 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 PPFIBP1Q86W92 1011 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CCAR2Q8N163 923 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CSGALNACT2Q8N6G5 542 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 SYT2Q8N9I0 419 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CCDC51Q96ER9 411 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 L3MBTL3Q96JM7 780 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 TEKT3Q9BXF9 490 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CSADQ9Y600 493 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 POTEB3A0JP26 581 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 POTECB2RU33 542 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 N4BP3O15049 544 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 KRT18P05783 430 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 IDEP14735 1019 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 DSG3P32926 999 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 IREB2P48200 963 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 COPB1P53618 953 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 HIRAP54198 1017 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 MAP3K9P80192 1104 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 KRT31Q15323 416 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 FAM26FQ5R3K3 315 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 ARMCX5Q6P1M9 558 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 POTEBQ6S5H4 581 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 GPBP1Q86WP2 473 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CATSPER3Q86XQ3 398 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 CNGA4Q8IV77 575 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 ZKSCAN4Q969J2 545 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 NUDT12Q9BQG2 462 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 ZNF577Q9BSK1 485 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 NAA15Q9BXJ9 866 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 RAVER2Q9HCJ3 691 aaKnown RBP14.04□□□□□ -0.16
SHMT2-229ENST00000557348 PANK4Q9NVE7 773 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 INTS13Q9NVM9 706 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 TCEAL9Q9UHQ7 104 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 ADAMTS5Q9UNA0 930 aa14.04□□□□□ -0.16
SHMT2-229ENST00000557348 A0A1W2PQC6 194 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 FRMD3A2A2Y4 597 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 MAFGO15525 162 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 ARHGAP6O43182 974 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 MED24O75448 989 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 EYA4O95677 639 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 PBX1P40424 430 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 STK4Q13043 487 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 COASYQ13057 564 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 EPHA7Q15375 998 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 PPP4R3CPQ6ZMV5 832 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 OTOP1Q7RTM1 612 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 DYMQ7RTS9 669 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 MYOCDQ8IZQ8 938 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 CPXCR1Q8N123 301 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 MSL3Q8N5Y2 521 aaKnown RBP14.03□□□□□ -0.16
SHMT2-229ENST00000557348 DNAJC19Q96DA6 116 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 TRERF1Q96PN7 1200 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 EIF2AK1Q9BQI3 630 aaKnown RBP14.03□□□□□ -0.16
SHMT2-229ENST00000557348 SCAF8Q9UPN6 1271 aaKnown RBP14.03□□□□□ -0.16
SHMT2-229ENST00000557348 AFG3L2Q9Y4W6 797 aa14.03□□□□□ -0.16
SHMT2-229ENST00000557348 SSC5DA1L4H1 1573 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms