RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 IFIT1BQ5T764 474 aaKnown RBP14.7□□□□□ -0.06
SHMT2-223ENST00000556689 CWC27Q6UX04 472 aaKnown RBP14.7□□□□□ -0.06
SHMT2-223ENST00000556689 EP400NLQ6ZTU2 488 aa14.7□□□□□ -0.06
SHMT2-223ENST00000556689 TMEM192Q8IY95 271 aa14.7□□□□□ -0.06
SHMT2-223ENST00000556689 MTMR8Q96EF0 704 aa14.7□□□□□ -0.06
SHMT2-223ENST00000556689 RNPEPQ9H4A4 650 aa14.7□□□□□ -0.06
SHMT2-223ENST00000556689 COL4A4P53420 1690 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 POTEB3A0JP26 581 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 GCOM1H8Y6P7 765 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 DCXO43602 365 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 PPP1R11O60927 126 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 CENPBP07199 599 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 POLR2MP0CAP2 368 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 UBA1P22314 1058 aaKnown RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 HOXC8P31273 242 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 TRAF1Q13077 416 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 POTEBQ6S5H4 581 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 IL31RAQ8NI17 732 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 ZFP91Q96JP5 570 aaPredicted RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 USP26Q9BXU7 913 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 NSUN3Q9H649 340 aaKnown RBP14.69□□□□□ -0.06
SHMT2-223ENST00000556689 CNNM2Q9H8M5 875 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 PRKAG3Q9UGI9 489 aa14.69□□□□□ -0.06
SHMT2-223ENST00000556689 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.68□□□□□ -0.06
SHMT2-223ENST00000556689 NOP56O00567 594 aaKnown RBP14.68□□□□□ -0.06
SHMT2-223ENST00000556689 NCK2O43639 380 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 LGALS2P05162 132 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 CTSHP09668 335 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 FCHSD1Q86WN1 690 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 APBB2Q92870 758 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 GPKOWQ92917 476 aaPredicted RBP eCLIP14.68□□□□□ -0.06
SHMT2-223ENST00000556689 DSCC1Q9BVC3 393 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 IFIH1Q9BYX4 1025 aaKnown RBP14.68□□□□□ -0.06
SHMT2-223ENST00000556689 OSBPL7Q9BZF2 842 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 DIAPH3Q9NSV4 1193 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 SETD4Q9NVD3 440 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 MAD2L2Q9UI95 211 aa14.68□□□□□ -0.06
SHMT2-223ENST00000556689 PALM3A6NDB9 673 aaPredicted RBP14.67□□□□□ -0.06
SHMT2-223ENST00000556689 HIP1O00291 1037 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 NEDD9Q14511 834 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 COL19A1Q14993 1142 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 GNPTABQ3T906 1256 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 FIBCD1Q8N539 461 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 IL17RAQ96F46 866 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 UPF3BQ9BZI7 483 aaKnown RBP14.67□□□□□ -0.06
SHMT2-223ENST00000556689 BCAS3Q9H6U6 928 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 CLDND1Q9NY35 253 aa14.67□□□□□ -0.06
SHMT2-223ENST00000556689 KIAA1217Q5T5P2 1943 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 C19orf67A6NJJ6 358 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 STAM2O75886 525 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 RB1P06400 928 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 RRP1P56182 461 aaKnown RBP14.66□□□□□ -0.06
SHMT2-223ENST00000556689 ZP2Q05996 745 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 SEC23AQ15436 765 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 FAM26DQ5JW98 314 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 B4GALNT3Q6L9W6 998 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 METTL7BQ6UX53 244 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 CYFIP1Q7L576 1253 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 HOMER1Q86YM7 354 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 ADHFE1Q8IWW8 467 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 KCNH6Q9H252 994 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 OSBPL3Q9H4L5 887 aa14.66□□□□□ -0.06
SHMT2-223ENST00000556689 SIP14410 1827 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 SPATA31C2B4DYI2 1134 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 ICAM3P32942 547 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 BMPR1AP36894 532 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 MRPS9P82933 396 aaKnown RBP14.65□□□□□ -0.06
SHMT2-223ENST00000556689 PLEKHM2Q8IWE5 1019 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 PIGSQ96S52 555 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 GPR20Q99678 358 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 RIOX1Q9H6W3 641 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 RTEL1Q9NZ71 1219 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 ZNF215Q9UL58 517 aaPredicted RBP14.65□□□□□ -0.06
SHMT2-223ENST00000556689 BRWD1Q9NSI6 2320 aa14.65□□□□□ -0.06
SHMT2-223ENST00000556689 PNMA6FA0A0J9YX94 578 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 C5orf67F2Z3F1 127 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 CTNNB1P35222 781 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 LTBRP36941 435 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 MRE11P49959 708 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 ADAM17P78536 824 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 ARHGAP4P98171 946 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 CTC1Q2NKJ3 1217 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 UTP14CQ5TAP6 766 aaKnown RBP14.64□□□□□ -0.07
SHMT2-223ENST00000556689 RPAINQ86UA6 219 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 INPP4AQ96PE3 977 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-223ENST00000556689 C11orf84Q9BUA3 381 aaPredicted RBP14.64□□□□□ -0.07
SHMT2-223ENST00000556689 LMAN2LQ9H0V9 348 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 RWDD3Q9Y3V2 267 aa14.64□□□□□ -0.07
SHMT2-223ENST00000556689 MYH7BA7E2Y1 1941 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 FIBPO43427 364 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 CHRNA1P02708 482 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 NHLH1Q02575 133 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 TRDNQ13061 729 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 GRM4Q14833 912 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 SLC35G1Q2M3R5 365 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 CYB5R4Q7L1T6 521 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 CHD1LQ86WJ1 897 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 SMC5Q8IY18 1101 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 FBXL18Q96ME1 805 aa14.63□□□□□ -0.07
SHMT2-223ENST00000556689 SENP7Q9BQF6 1050 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms