RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ZFPM1Q8IX07 1006 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 FAM178BQ8IXR5 827 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 NLGN1Q8N2Q7 840 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 CCSER1Q9C0I3 900 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 ZBTB12Q9Y330 459 aaPredicted RBP16.32■□□□□ 0.2
CUX1-215ENST00000556210 RABGAP1Q9Y3P9 1069 aa16.32■□□□□ 0.2
CUX1-215ENST00000556210 H3BQF6 201 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 LIG3P49916 1009 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 CFAP221Q4G0U5 840 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 LRCH2Q5VUJ6 765 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 CDC42EP5Q6NZY7 148 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 ZMYND12Q9H0C1 365 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 ARHGEF10LQ9HCE6 1279 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 EPB41L5Q9HCM4 733 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 HDAC9Q9UKV0 1011 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 TESPA1A2RU30 521 aaPredicted RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 CDKAL1Q5VV42 579 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 GIMAP8Q8ND71 665 aaPredicted RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 RAD54LQ92698 747 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 COA1Q9GZY4 146 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 DDX4Q9NQI0 724 aaKnown RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 AFDNP55196 1824 aaKnown RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 BACH1O14867 736 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 BMP3P12645 472 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 GYS1P13807 737 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 PPP1R2P41236 205 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 ARHGAP4P98171 946 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 MKRN4PQ13434 485 aaPredicted RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 C16orf86Q6ZW13 317 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 CUEDC2Q9H467 287 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 PI4KBQ9UBF8 816 aa16.31■□□□□ 0.2
CUX1-215ENST00000556210 TRPC5Q9UL62 973 aaPredicted RBP16.31■□□□□ 0.2
CUX1-215ENST00000556210 TNFAIP3P21580 790 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 CCT5P48643 541 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 SRLQ86TD4 932 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 TCHPQ9BT92 498 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 SELENOOQ9BVL4 669 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 KCND1Q9NSA2 647 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 RHOBTB3O94955 611 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 PDE6BP35913 854 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 SLC10A5Q5PT55 438 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 GSTTP1A0A1W2PQM5 241 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 OPA1O60313 960 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 ZNF543Q08ER8 600 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 KCNK18Q7Z418 384 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 SPZ1Q9BXG8 430 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 LRRC4BQ9NT99 713 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 STK17AQ9UEE5 414 aa16.3■□□□□ 0.2
CUX1-215ENST00000556210 GPR75-ASB3A0A0A6YYF3 556 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 FAM83BQ5T0W9 1011 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 STXBP4Q6ZWJ1 553 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 CAPN11Q9UMQ6 739 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 NDUFAB1O14561 156 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 NAALADL2Q58DX5 795 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 CTTNBP2NLQ9P2B4 639 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 KRT5P13647 590 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 TBX2Q13207 712 aaPredicted RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 E2F4Q16254 413 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 OTUD6BQ8N6M0 293 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 BCAS4Q8TDM0 211 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 CHD2O14647 1828 aaKnown RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 GOLGA8IPA6NC78 632 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 GOLGA8JA6NMD2 632 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 EIF3CLB5ME19 914 aaKnown RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 CALUO43852 315 aaPredicted RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 PALMO75781 387 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 KCNH2Q12809 1159 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 VPS72Q15906 364 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 DPH6Q7L8W6 267 aa16.29■□□□□ 0.2
CUX1-215ENST00000556210 EIF3CQ99613 913 aaKnown RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 CHORDC1Q9UHD1 332 aaPredicted RBP16.29■□□□□ 0.2
CUX1-215ENST00000556210 GRB10Q13322 594 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 TTI2Q6NXR4 508 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 CYP2W1Q8TAV3 490 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 DYDC1Q8WWB3 177 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 SEMA6BQ9H3T3 888 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.28■□□□□ 0.2
CUX1-215ENST00000556210 VPS41P49754 854 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 NT5DC1Q5TFE4 455 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 BARGINQ6ZT62 677 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 COG1Q8WTW3 980 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 MRRFQ96E11 262 aaKnown RBP16.28■□□□□ 0.2
CUX1-215ENST00000556210 NFU1Q9UMS0 254 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 HEXIM1O94992 359 aaKnown RBP16.28■□□□□ 0.2
CUX1-215ENST00000556210 MUM1L1Q5H9M0 696 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 EHMT1Q9H9B1 1298 aa16.28■□□□□ 0.2
CUX1-215ENST00000556210 KDM3AQ9Y4C1 1321 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 SRGNP10124 158 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 STAT1P42224 750 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 EZH2Q15910 746 aaKnown RBP16.27■□□□□ 0.2
CUX1-215ENST00000556210 BANK1Q8NDB2 785 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 CCDC17Q96LX7 622 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 LRRC1Q9BTT6 524 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 GCNT4Q9P109 453 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 TRIM49P0CI25 452 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 TRIM49CP0CI26 452 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 DLATP10515 647 aaKnown RBP16.27■□□□□ 0.2
CUX1-215ENST00000556210 INPP5BP32019 993 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 TNNC1P63316 161 aa16.27■□□□□ 0.2
CUX1-215ENST00000556210 SYDE2Q5VT97 1194 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms