RNA–Protein interactions for RNA: ENST00000555022.5

SYNE2-217, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,396 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-217ENST00000555022 TFAP4Q01664 338 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 GNPTABQ3T906 1256 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 SFMBT2Q5VUG0 894 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 CLEC10AQ8IUN9 316 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 GIMAP8Q8ND71 665 aaPredicted RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 PRMT1Q99873 361 aaKnown RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 DBR1Q9UK59 544 aaKnown RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 PTPN22Q9Y2R2 807 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 MYMKA6NI61 221 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 FGFR4P22455 802 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 PPP2R2AP63151 447 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 TNNC1P63316 161 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 BYSLQ13895 437 aaKnown RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 CERKQ8TCT0 537 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 TNFRSF25Q93038 417 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 SPAG5Q96R06 1193 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 BCAS3Q9H6U6 928 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 TMBIM4Q9HC24 238 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 ARHGEF10LQ9HCE6 1279 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 PNMA3Q9UL41 463 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 AGAP1Q9UPQ3 857 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 N4BP2Q86UW6 1770 aaPredicted RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 GRID2IPA4D2P6 1211 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 ATP6V1G2O95670 118 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 IGHMBP2P38935 993 aaKnown RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 VPS41P49754 854 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 ELF3P78545 371 aaPredicted RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 FAM83BQ5T0W9 1011 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 THEMIS2Q5TEJ8 643 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 FAM43BQ6ZT52 329 aaPredicted RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 KCNK18Q7Z418 384 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 AGAP11Q8TF27 550 aa9.74□□□□□ -0.85
SYNE2-217ENST00000555022 NOC2LQ9Y3T9 749 aaKnown RBP9.74□□□□□ -0.85
SYNE2-217ENST00000555022 TOPAZ1Q8N9V7 1692 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 ANP32DO95626 131 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 KRT18P05783 430 aaKnown RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TNNI2P48788 182 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 SARNPP82979 210 aaKnown RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 CDC37Q16543 378 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 SLC9C1Q4G0N8 1177 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 PDXDC1Q6P996 788 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 SAMD1Q6SPF0 538 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TMTC2Q8N394 836 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 CAVIN3Q969G5 261 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 GPR101Q96P66 508 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 NUP58Q9BVL2 599 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TAF1DQ9H5J8 278 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 KCNK9Q9NPC2 374 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 PLAGL2Q9UPG8 496 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 FRMPD2Q68DX3 1309 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 HMGB1P1B2RPK0 211 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TBC1D10BQ4KMP7 808 aaPredicted RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 SLC30A10Q6XR72 485 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 RNF217Q8TC41 542 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 U2AF1L4Q8WU68 220 aaKnown RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 RSRC1Q96IZ7 334 aaKnown RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 MXD3Q9BW11 206 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TMOD4Q9NZQ9 345 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 TBK1Q9UHD2 729 aa9.73□□□□□ -0.85
SYNE2-217ENST00000555022 RTCBQ9Y3I0 505 aaKnown RBP9.73□□□□□ -0.85
SYNE2-217ENST00000555022 EVI5O60447 810 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 CREB1P16220 341 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 EVA1CP58658 441 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 SATB1Q01826 763 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 USP17L2Q6R6M4 530 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 VGLL2Q8N8G2 317 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 EPS8L3Q8TE67 593 aaKnown RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PURBQ96QR8 312 aaKnown RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 GDF3Q9NR23 364 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 SIK3Q9Y2K2 1263 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 BICDL2A1A5D9 508 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 UBOX5O94941 541 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 TDP2O95551 362 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 BMP15O95972 392 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 SLC9A1P19634 815 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PRDX5P30044 214 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 LONP1P36776 959 aaKnown RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 CAPN12Q6ZSI9 719 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PEX26Q7Z412 305 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 ERICH1Q86X53 443 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 FAM114A1Q8IWE2 563 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 CCDC197Q8NCU1 140 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PNMA1Q8ND90 353 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 ELMO3Q96BJ8 720 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 COA7Q96BR5 231 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 CALR3Q96L12 384 aaKnown RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 MKNK2Q9HBH9 465 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 F8W031 263 aaPredicted RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 TRAPPC3O43617 180 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 RHOBTB3O94955 611 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 TRIM37O94972 964 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 FGGP02679 453 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 TRIP13Q15645 432 aaPredicted RBP9.72□□□□□ -0.85
SYNE2-217ENST00000555022 ASIC2Q16515 512 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 PHLDB2Q86SQ0 1253 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 METTL13Q8N6R0 699 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 USP38Q8NB14 1042 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 SNX29Q8TEQ0 813 aa9.72□□□□□ -0.85
SYNE2-217ENST00000555022 LMBR1Q8WVP7 490 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms