RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 JADE2Q9NQC1 790 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 HDAC6Q9UBN7 1215 aa13.25□□□□□ -0.29
CCDC88C-208ENST00000554165 FAM86B1E9PN63 330 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 HAS3O00219 553 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 EDIL3O43854 480 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 PPFIA4O75335 1185 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 FOSP01100 380 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 FAM86B2P0C5J1 330 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 ACRP10323 421 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 HOXD11P31277 338 aaPredicted RBP13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 SREBF1P36956 1147 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 ARHGAP4P98171 946 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 FPGSQ05932 587 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 ST3GAL1Q11201 340 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 MTMR1Q13613 665 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 MFSD10Q14728 455 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 NPY5RQ15761 445 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 KIAA0753Q2KHM9 967 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 NFRKBQ6P4R8 1299 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 METTL7BQ6UX53 244 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 VWCEQ96DN2 955 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 GPR20Q99678 358 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 MXRA8Q9BRK3 442 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 WNT8AQ9H1J5 351 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 HIPK3Q9H422 1215 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 C6orf50Q9HD87 102 aa13.24□□□□□ -0.29
CCDC88C-208ENST00000554165 F2P00734 622 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 LGALS2P05162 132 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 NLRP5P59047 1200 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 ITGB3BPQ13352 177 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 AP3B2Q13367 1082 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 NEDD9Q14511 834 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 UTP14CQ5TAP6 766 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 MFSD5Q6N075 450 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 TRIM22Q8IYM9 498 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 REXO1Q8N1G1 1221 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 CRYGNQ8WXF5 182 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 DHX38Q92620 1227 aaKnown RBP13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 WNT8BQ93098 351 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 SCLYQ96I15 445 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 SENP7Q9BQF6 1050 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 KCNH7Q9NS40 1196 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 KCNJ14Q9UNX9 436 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 SZT2Q5T011 3432 aa13.23□□□□□ -0.29
CCDC88C-208ENST00000554165 LAMA2P24043 3122 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 TRIP12Q14669 1992 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 A0A1W2PPC1 479 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 GSTTP1A0A1W2PQM5 241 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 MEIS1O00470 390 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 NOP56O00567 594 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 JAK2O60674 1132 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 DEXIO95424 95 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 FDPSP14324 419 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 ANKRD1Q15327 319 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 PTGISQ16647 500 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 CEP55Q53EZ4 464 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 GLT8D2Q9H1C3 349 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 EHMT1Q9H9B1 1298 aa13.22□□□□□ -0.29
CCDC88C-208ENST00000554165 IGLV3-22A0A075B6J6 115 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 H3BRB1 525 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 GNA11P29992 359 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 ZNF76P36508 570 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 FOSBP53539 338 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 TMEM240Q5SV17 173 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 CPLX2Q6PUV4 134 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 SESTD1Q86VW0 696 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 PLA2G4DQ86XP0 818 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 C7orf31Q8N865 590 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 CCDC148Q8NFR7 591 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 CCDC12Q8WUD4 166 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 GTF3C6Q969F1 213 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 SEZ6LQ9BYH1 1024 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 C22orf23Q9BZE7 217 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 TUT1Q9H6E5 874 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 AGO4Q9HCK5 861 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 SH3GLB2Q9NR46 395 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 ORC3Q9UBD5 711 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 GTF2IRD1Q9UHL9 959 aa13.21□□□□□ -0.29
CCDC88C-208ENST00000554165 M0R2N6 131 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 DDX39AO00148 427 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 CCNE2O96020 404 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 CYP3A4P08684 503 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 SUPT20HL2P0C7V6 817 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 SMIM10L2AP0DMW4 78 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 SMIM10L2BP0DMW5 78 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 TCF7P36402 384 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 PTPN11Q06124 597 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 LRIT3Q3SXY7 679 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 FAM109BQ6ICB4 259 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 ZNF365Q70YC5 407 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 TEX2Q8IWB9 1127 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 TMEM199Q8N511 208 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 NSUN7Q8NE18 718 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 OXER1Q8TDS5 423 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 GJA10Q969M2 543 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 CDHR1Q96JP9 859 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 PCYT2Q99447 389 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 RNPEPQ9H4A4 650 aa13.2□□□□□ -0.3
CCDC88C-208ENST00000554165 SETD4Q9NVD3 440 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms