RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 PLVAPQ9BX97 442 aa16.22■□□□□ 0.19
PRPF39-204ENST00000553605 ECHDC1Q9NTX5 307 aa16.22■□□□□ 0.19
PRPF39-204ENST00000553605 PLAGL2Q9UPG8 496 aa16.22■□□□□ 0.19
PRPF39-204ENST00000553605 MRVI1Q9Y6F6 885 aa16.22■□□□□ 0.19
PRPF39-204ENST00000553605 ADGRA3Q8IWK6 1321 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 CAND2O75155 1236 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 EIF3JO75822 258 aaKnown RBP16.21■□□□□ 0.19
PRPF39-204ENST00000553605 TOP1P11387 765 aaKnown RBP16.21■□□□□ 0.19
PRPF39-204ENST00000553605 HOXD8P13378 290 aaPredicted RBP16.21■□□□□ 0.19
PRPF39-204ENST00000553605 PTPN21Q16825 1174 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 ADGRD2Q7Z7M1 963 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 SYTL5Q8TDW5 730 aaPredicted RBP16.21■□□□□ 0.19
PRPF39-204ENST00000553605 RMDN3Q96TC7 470 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 SEC62Q99442 399 aaKnown RBP16.21■□□□□ 0.19
PRPF39-204ENST00000553605 TMEM47Q9BQJ4 181 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 MAF1Q9H063 256 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 COL20A1Q9P218 1284 aa16.21■□□□□ 0.19
PRPF39-204ENST00000553605 RIF1Q5UIP0 2472 aaKnown RBP16.21■□□□□ 0.18
PRPF39-204ENST00000553605 KIAA1217Q5T5P2 1943 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 TREHO43280 583 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 PDGFBP01127 241 aaPredicted RBP16.2■□□□□ 0.18
PRPF39-204ENST00000553605 PDHBP11177 359 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 BTG3Q14201 252 aaPredicted RBP16.2■□□□□ 0.18
PRPF39-204ENST00000553605 HSDL1Q3SXM5 330 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 C16orf70Q9BSU1 422 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 LRRCC1Q9C099 1032 aa16.2■□□□□ 0.18
PRPF39-204ENST00000553605 BARX2Q9UMQ3 279 aaPredicted RBP16.2■□□□□ 0.18
PRPF39-204ENST00000553605 VPS13AQ96RL7 3174 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 SMARCA5O60264 1052 aaPredicted RBP16.19■□□□□ 0.18
PRPF39-204ENST00000553605 DNAJB1P25685 340 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 NRIP1P48552 1158 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 ARHGEF16Q5VV41 709 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 MYSM1Q5VVJ2 828 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 RBM23Q86U06 439 aaKnown RBP16.19■□□□□ 0.18
PRPF39-204ENST00000553605 ADSSL1Q8N142 457 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 P2RX5Q93086 422 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 NKD2Q969F2 451 aaPredicted RBP16.19■□□□□ 0.18
PRPF39-204ENST00000553605 SPATA33Q96N06 139 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 RNPEPQ9H4A4 650 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 RC3H2Q9HBD1 1191 aaKnown RBP16.19■□□□□ 0.18
PRPF39-204ENST00000553605 FAM186AA6NE01 2351 aa16.19■□□□□ 0.18
PRPF39-204ENST00000553605 SORBS3O60504 671 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 GLP2RO95838 553 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 SMIM10L2AP0DMW4 78 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 SMIM10L2BP0DMW5 78 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 ATF7P17544 494 aaPredicted RBP16.18■□□□□ 0.18
PRPF39-204ENST00000553605 HOXC8P31273 242 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 ZNF543Q08ER8 600 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 NAALADL2Q58DX5 795 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 CELF3Q5SZQ8 465 aaKnown RBP16.18■□□□□ 0.18
PRPF39-204ENST00000553605 SPPL3Q8TCT6 385 aa16.18■□□□□ 0.18
PRPF39-204ENST00000553605 ZNF689Q96CS4 500 aaPredicted RBP16.18■□□□□ 0.18
PRPF39-204ENST00000553605 MYH7BA7E2Y1 1941 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 H3BRB1 525 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 ITGB1P05556 798 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 NR3C2P08235 984 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 EIF2AK2P19525 551 aaKnown RBP16.17■□□□□ 0.18
PRPF39-204ENST00000553605 FAM26DQ5JW98 314 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 FRMD5Q7Z6J6 570 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 ZBTB33Q86T24 672 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 POTEDQ86YR6 584 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 MCF2L2Q86YR7 1114 aa16.17■□□□□ 0.18
PRPF39-204ENST00000553605 TUT1Q9H6E5 874 aaKnown RBP16.17■□□□□ 0.18
PRPF39-204ENST00000553605 ENPP3O14638 875 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 ORC4O43929 436 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 DGKIO75912 1065 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 GGPS1O95749 300 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 KCNV1Q6PIU1 500 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 TMEM105Q8N8V8 129 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 POF1BQ8WVV4 589 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 SUSD6Q92537 303 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 TLE6Q9H808 572 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 ZBTB40Q9NUA8 1239 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 TCP11L1Q9NUJ3 509 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 ANAPC4Q9UJX5 808 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 ABCB11O95342 1321 aa16.16■□□□□ 0.18
PRPF39-204ENST00000553605 RGS20O76081 388 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 SNHG28P0DPA3 235 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 GNAT1P11488 350 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 TSHZ3Q63HK5 1081 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 MCTP2Q6DN12 878 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 KLHL23Q8NBE8 558 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 GPATCH3Q96I76 525 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 UBA5Q9GZZ9 404 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 PXMP2Q9NR77 195 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 TOMM22Q9NS69 142 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 SETD4Q9NVD3 440 aa16.15■□□□□ 0.18
PRPF39-204ENST00000553605 MRPL42Q9Y6G3 142 aaKnown RBP16.15■□□□□ 0.18
PRPF39-204ENST00000553605 MED19A0JLT2 244 aaPredicted RBP16.14■□□□□ 0.17
PRPF39-204ENST00000553605 FOXP2O15409 715 aa16.14■□□□□ 0.17
PRPF39-204ENST00000553605 FGRP09769 529 aa16.14■□□□□ 0.17
PRPF39-204ENST00000553605 HSPD1P10809 573 aaKnown RBP16.14■□□□□ 0.17
PRPF39-204ENST00000553605 SP2Q02086 613 aa16.14■□□□□ 0.17
PRPF39-204ENST00000553605 RRP12Q5JTH9 1297 aaKnown RBP16.14■□□□□ 0.17
PRPF39-204ENST00000553605 CPVLQ9H3G5 476 aa16.14■□□□□ 0.17
PRPF39-204ENST00000553605 MLXIPQ9HAP2 919 aa16.14■□□□□ 0.17
PRPF39-204ENST00000553605 PER2O15055 1255 aa16.13■□□□□ 0.17
PRPF39-204ENST00000553605 CHRNA1P02708 482 aa16.13■□□□□ 0.17
PRPF39-204ENST00000553605 LGALS2P05162 132 aa16.13■□□□□ 0.17
PRPF39-204ENST00000553605 GOLGA8HP0CJ92 632 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms