RNA–Protein interactions for RNA: ENST00000551338.1

RAB5C-208, Transcript of RAB5C, member RAS oncogene family, human

TSL 2

Gene RAB5C, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RAB5C-208	ENST00000551338	PITPNM2	Q9BZ72	1349 aa		12.82	□□□□□ -0.36
RAB5C-208	ENST00000551338	NPHP3-ACAD11	A0A0J9YXS1	232 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338		A0A1W2PQC6	194 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	RNF225	M0QZC1	329 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	KIF2A	O00139	706 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	PSMC6	P62333	389 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	CACNB1	Q02641	598 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	UBXN1	Q04323	297 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	PPP2R5C	Q13362	524 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	LRRC41	Q15345	812 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	ZCWPW2	Q504Y3	356 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	ARSH	Q5FYA8	562 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	LRRC55	Q6ZSA7	311 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	CREBRF	Q8IUR6	639 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	CNGA4	Q8IV77	575 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	CCDC65	Q8IXS2	484 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	SYT2	Q8N9I0	419 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	ZFP91	Q96JP5	570 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	C12orf42	Q96LP6	360 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	EIF2AK1	Q9BQI3	630 aa	Known RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	TUBGCP2	Q9BSJ2	902 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	RPAP3	Q9H6T3	665 aa	Predicted RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	RAVER2	Q9HCJ3	691 aa	Known RBP	12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	GGA3	Q9NZ52	723 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	PPP2R2C	Q9Y2T4	447 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	FRMPD4	Q14CM0	1322 aa		12.81	□□□□□ -0.36
RAB5C-208	ENST00000551338	LRRC37A2	A6NM11	1700 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	SOWAHD	A6NJG2	315 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338		B4DLN1	442 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MEIS1	O00470	390 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	DYNC1I1	O14576	645 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	NKRF	O15226	690 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	EYA4	O95677	639 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	AR	P10275	920 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	ALAS1	P13196	640 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	LMNB1	P20700	586 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MTIF2	P46199	727 aa	Known RBP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	DNM2	P50570	870 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	HIRA	P54198	1017 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	USP14	P54578	494 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	SET	Q01105	290 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	CYP4A11	Q02928	519 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	LRRC63	Q05C16	580 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	PABPC4	Q13310	644 aa	Known RBP eCLIP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MTF1	Q14872	753 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	CEP55	Q53EZ4	464 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MUM1L1	Q5H9M0	696 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MIIP	Q5JXC2	388 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	LRCH2	Q5VUJ6	765 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	PRAMEF18	Q5VWM3	479 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	B3GNT9	Q6UX72	402 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	RAD9B	Q6WBX8	426 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	TOGARAM2	Q6ZUX3	1019 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	OTOP1	Q7RTM1	612 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MYOCD	Q8IZQ8	938 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	IL31RA	Q8NI17	732 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	CPLX3	Q8WVH0	158 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	WRNIP1	Q96S55	665 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	MXRA8	Q9BRK3	442 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	NAA15	Q9BXJ9	866 aa	Known RBP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	TANGO6	Q9C0B7	1094 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	AS3MT	Q9HBK9	375 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	TUFT1	Q9NNX1	390 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	BMP2K	Q9NSY1	1161 aa	Predicted RBP	12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	FZD1	Q9UP38	647 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	RABGAP1	Q9Y3P9	1069 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	PPP2R3B	Q9Y5P8	575 aa		12.8	□□□□□ -0.36
RAB5C-208	ENST00000551338	FLOT1	O75955	427 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TPM1	P09493	284 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	PRKCSH	P14314	528 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	PTPRA	P18433	802 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	EPS15	P42566	896 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	SPP2	Q13103	211 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	GIT2	Q14161	759 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	NOL9	Q5SY16	702 aa	Known RBP	12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TRIM65	Q6PJ69	517 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	CPXCR1	Q8N123	301 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	GPC2	Q8N158	579 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	REPS2	Q8NFH8	660 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	SYTL5	Q8TDW5	730 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	ZKSCAN4	Q969J2	545 aa	Predicted RBP	12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	ATG4C	Q96DT6	458 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	DYDC2	Q96IM9	177 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TSG101	Q99816	390 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	REEP2	Q9BRK0	252 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TEKT3	Q9BXF9	490 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TTYH3	Q9C0H2	523 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	ABHD10	Q9NUJ1	306 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	RGL1	Q9NZL6	768 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	TBC1D7	Q9P0N9	293 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	PAXBP1	Q9Y5B6	917 aa		12.79	□□□□□ -0.36
RAB5C-208	ENST00000551338	RASSF10	A6NK89	507 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	ZSCAN12	O43309	604 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	GAS7	O60861	476 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	KRT18	P05783	430 aa	Known RBP	12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	BACE1	P56817	501 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	ERVK-24	P63145	666 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	RAD51AP2	Q09MP3	1159 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	ARHGAP27	Q6ZUM4	889 aa		12.78	□□□□□ -0.36
RAB5C-208	ENST00000551338	NIPA1	Q7RTP0	329 aa		12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms