RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 PTGDRQ13258 359 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 CELF3Q5SZQ8 465 aaKnown RBP23.98■■□□□ 1.43
VPS29-206ENST00000549578 DHX37Q8IY37 1157 aaKnown RBP23.98■■□□□ 1.43
VPS29-206ENST00000549578 OR6J1Q8NGC5 347 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 CHAMP1Q96JM3 812 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 USP28Q96RU2 1077 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 CHMP5Q9NZZ3 219 aa23.98■■□□□ 1.43
VPS29-206ENST00000549578 DHX15O43143 795 aaKnown RBP23.97■■□□□ 1.43
VPS29-206ENST00000549578 MARCH6O60337 910 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 FARP2O94887 1054 aaPredicted RBP23.97■■□□□ 1.43
VPS29-206ENST00000549578 PGK1P00558 417 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 SP4Q02446 784 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 SF3A1Q15459 793 aaKnown RBP23.97■■□□□ 1.43
VPS29-206ENST00000549578 LRCH2Q5VUJ6 765 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 C4orf32Q8N8J7 132 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 MTMR9Q96QG7 549 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 SDF4Q9BRK5 362 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 MLXIPQ9HAP2 919 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 XPNPEP3Q9NQH7 507 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 TFIP11Q9UBB9 837 aaKnown RBP23.97■■□□□ 1.43
VPS29-206ENST00000549578 TELO2Q9Y4R8 837 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 SYNRGQ9UMZ2 1314 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 FRMPD3Q5JV73 1810 aa23.97■■□□□ 1.43
VPS29-206ENST00000549578 TBX3O15119 743 aa23.96■■□□□ 1.43
VPS29-206ENST00000549578 METTL7BQ6UX53 244 aa23.96■■□□□ 1.43
VPS29-206ENST00000549578 GIMAP8Q8ND71 665 aaPredicted RBP23.96■■□□□ 1.43
VPS29-206ENST00000549578 FAM20AQ96MK3 541 aa23.96■■□□□ 1.43
VPS29-206ENST00000549578 JPH1Q9HDC5 661 aaPredicted RBP23.96■■□□□ 1.43
VPS29-206ENST00000549578 NFASCO94856 1347 aa23.96■■□□□ 1.43
VPS29-206ENST00000549578 GAS7O60861 476 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 OR52Z1P0C646 297 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 DNM1Q05193 864 aaKnown RBP23.95■■□□□ 1.43
VPS29-206ENST00000549578 LAMC2Q13753 1193 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 SPATA33Q96N06 139 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 ZNF396Q96N95 335 aaPredicted RBP23.95■■□□□ 1.43
VPS29-206ENST00000549578 RIT2Q99578 217 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 AP5M1Q9H0R1 490 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 TBC1D22BQ9NU19 505 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 Q9Y3F1 56 aa23.95■■□□□ 1.43
VPS29-206ENST00000549578 MYADML2A6NDP7 307 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 PSMD10O75832 226 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 BAG4O95429 457 aaKnown RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 C6orf222P0C671 652 aaPredicted RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 TXKP42681 527 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 GJA9P57773 515 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 HSDL1Q3SXM5 330 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 SLFN12Q8IYM2 578 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 AFG1LQ8WV93 481 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 EMID1Q96A84 441 aaPredicted RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 TEKT3Q9BXF9 490 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 SLC9A2Q9UBY0 812 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 ADAMTS4O75173 837 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 MYCNP04198 464 aaPredicted RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 GJB1P08034 283 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 ATP2C1P98194 919 aaPredicted RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 BEX3Q00994 111 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 UPF3AQ9H1J1 476 aaKnown RBP23.94■■□□□ 1.42
VPS29-206ENST00000549578 ATP6V1DQ9Y5K8 247 aa23.94■■□□□ 1.42
VPS29-206ENST00000549578 CTAGE5O15320 804 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 CCNE2O96020 404 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 PTPAQ15257 358 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 U2AF1L4Q8WU68 220 aaKnown RBP23.93■■□□□ 1.42
VPS29-206ENST00000549578 TTC12Q9H892 705 aaPredicted RBP23.93■■□□□ 1.42
VPS29-206ENST00000549578 SPC25Q9HBM1 224 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 POLR3EQ9NVU0 708 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 VAV3Q9UKW4 847 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 CEP131Q9UPN4 1083 aa23.93■■□□□ 1.42
VPS29-206ENST00000549578 NOP56O00567 594 aaKnown RBP23.92■■□□□ 1.42
VPS29-206ENST00000549578 CHMP2AO43633 222 aa23.92■■□□□ 1.42
VPS29-206ENST00000549578 FSCN1Q16658 493 aaKnown RBP23.92■■□□□ 1.42
VPS29-206ENST00000549578 PPTC7Q8NI37 304 aa23.92■■□□□ 1.42
VPS29-206ENST00000549578 UNC45AQ9H3U1 944 aa23.92■■□□□ 1.42
VPS29-206ENST00000549578 LAD1O00515 517 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 SGPL1O95470 568 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 BMP15O95972 392 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 NASPP49321 788 aaPredicted RBP23.91■■□□□ 1.42
VPS29-206ENST00000549578 GPR20Q99678 358 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 TMEM106CQ9BVX2 250 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 TCEAL9Q9UHQ7 104 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 PCDHA12Q9UN75 941 aa23.91■■□□□ 1.42
VPS29-206ENST00000549578 A6NJR5 290 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 MMP3P08254 477 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 NCLP19338 710 aaKnown RBP23.9■■□□□ 1.42
VPS29-206ENST00000549578 ACTR2P61160 394 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 KRT76Q01546 638 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 LRRC41Q15345 812 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 GNASQ5JWF2 1037 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 OGDHLQ9ULD0 1010 aa23.9■■□□□ 1.42
VPS29-206ENST00000549578 KIAA0100Q14667 2235 aaKnown RBP23.9■■□□□ 1.42
VPS29-206ENST00000549578 GSTTP1A0A1W2PQM5 241 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 MARCKSP29966 332 aaPredicted RBP23.89■■□□□ 1.42
VPS29-206ENST00000549578 PRPHP41219 470 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 TECP42680 631 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 CPT1AP50416 773 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 NKX3-2P78367 333 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 SPIRE1Q08AE8 756 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 PPP2R5CQ13362 524 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 STK38Q15208 465 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 IL17AQ16552 155 aa23.89■■□□□ 1.42
VPS29-206ENST00000549578 ATL3Q6DD88 541 aa23.89■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms