RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 POLD1P28340 1107 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 CTNNA1P35221 906 aaKnown RBP17.16■□□□□ 0.34
CUX1-211ENST00000546411 ACTN2P35609 894 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 PTF1AQ7RTS3 328 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 TMC4Q7Z404 712 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 UBL4BQ8N7F7 174 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 MRFAP1Q9Y605 127 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 FAM205AQ6ZU69 1335 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 PPP1R3GB7ZBB8 358 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 ATP1A1P05023 1023 aaKnown RBP17.16■□□□□ 0.34
CUX1-211ENST00000546411 VIMP08670 466 aaKnown RBP17.16■□□□□ 0.34
CUX1-211ENST00000546411 PHLDB2Q86SQ0 1253 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 RAD54LQ92698 747 aa17.16■□□□□ 0.34
CUX1-211ENST00000546411 MESDQ14696 234 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 FAM83BQ5T0W9 1011 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 BCAS4Q8TDM0 211 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 AP1M1Q9BXS5 423 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 C3P01024 1663 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 UBR1Q8IWV7 1749 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 SPATA31A5Q5VU36 1347 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 SPATA31A7Q8IWB4 1347 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 ESYT3A0FGR9 886 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 KIF4AO95239 1232 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 STRN3Q13033 797 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 KIFAP3Q92845 792 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 LRRC45Q96CN5 670 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 ANAPC4Q9UJX5 808 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 GOLGA8IPA6NC78 632 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 GOLGA8JA6NMD2 632 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 ZNF185O15231 689 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 CHRNA5P30532 468 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 NFRKBQ6P4R8 1299 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 IL17RAQ96F46 866 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 CCSER1Q9C0I3 900 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 RGL1Q9NZL6 768 aa17.15■□□□□ 0.34
CUX1-211ENST00000546411 CD19P15391 556 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 ALKBH5Q6P6C2 394 aaKnown RBP17.14■□□□□ 0.33
CUX1-211ENST00000546411 NAP1L3Q99457 506 aaPredicted RBP17.14■□□□□ 0.33
CUX1-211ENST00000546411 RASSF4Q9H2L5 321 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 MYMKA6NI61 221 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 CCDC121Q6ZUS5 278 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 SYCE1Q8N0S2 351 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 SPZ1Q9BXG8 430 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 TMOD4Q9NZQ9 345 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 A0A087X0B3 334 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 hCG_1984214I3L0E3 225 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 PDHBP11177 359 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 TMEM179Q6ZVK1 233 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 ZNF713Q8N859 430 aaPredicted RBP17.14■□□□□ 0.33
CUX1-211ENST00000546411 MASTLQ96GX5 879 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 PAGR1Q9BTK6 254 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 EXOC7Q9UPT5 735 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 FER1L4A9Z1Z3 1794 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 TCHHQ07283 1943 aa17.14■□□□□ 0.33
CUX1-211ENST00000546411 KCNH2Q12809 1159 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 REXO1L1PQ8IX06 675 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 LRRN4CLQ8ND94 238 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 ANKRD7Q92527 254 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 SUGCTQ9HAC7 445 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 PARVGQ9HBI0 331 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 E7EVH7 732 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 CTIFO43310 598 aaKnown RBP17.13■□□□□ 0.33
CUX1-211ENST00000546411 PSMC2P35998 433 aaKnown RBP17.13■□□□□ 0.33
CUX1-211ENST00000546411 VSNL1P62760 191 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 FLAD1Q8NFF5 587 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 POMGNT1Q8WZA1 660 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 LIMA1Q9UHB6 759 aaKnown RBP17.13■□□□□ 0.33
CUX1-211ENST00000546411 MAD2L2Q9UI95 211 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 ADAM21Q9UKJ8 722 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 ECE2O60344 883 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 ZNF365Q70YC5 407 aa17.13■□□□□ 0.33
CUX1-211ENST00000546411 BCL9O00512 1426 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 MYL7Q01449 175 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 TAB3Q8N5C8 712 aaPredicted RBP17.12■□□□□ 0.33
CUX1-211ENST00000546411 FAM71BQ8TC56 605 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 ZNF408Q9H9D4 720 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 STK24Q9Y6E0 443 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 IKBKGQ9Y6K9 419 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 HNRNPDLO14979 420 aaKnown RBP17.12■□□□□ 0.33
CUX1-211ENST00000546411 PALMO75781 387 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 KRT19P08727 400 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 ZNF543Q08ER8 600 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 PSMD2Q13200 908 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 GLG1Q92896 1179 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 CCDC77Q9BR77 488 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 FAM184BQ9ULE4 1060 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 PTPN22Q9Y2R2 807 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 NOP56O00567 594 aaKnown RBP17.12■□□□□ 0.33
CUX1-211ENST00000546411 TMED8Q6PL24 325 aaPredicted RBP17.12■□□□□ 0.33
CUX1-211ENST00000546411 PODNQ7Z5L7 613 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 BANK1Q8NDB2 785 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 MGARPQ8TDB4 240 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 SMARCAL1Q9NZC9 954 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 CLEC11AQ9Y240 323 aa17.12■□□□□ 0.33
CUX1-211ENST00000546411 PVALEFA0A1B0GWK0 134 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 LRRIQ4A6NIV6 560 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 SERPING1P05155 500 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 CEP57Q86XR8 500 aa17.11■□□□□ 0.33
CUX1-211ENST00000546411 GUF1Q8N442 669 aaKnown RBP17.11■□□□□ 0.33
CUX1-211ENST00000546411 HOOK2Q96ED9 719 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms