RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 MLXIPQ9HAP2 919 aa23.26■■□□□ 1.31
HMGA2-211ENST00000545998 PKD2L1Q9P0L9 805 aa23.26■■□□□ 1.31
HMGA2-211ENST00000545998 PDCP20941 246 aa23.25■■□□□ 1.31
HMGA2-211ENST00000545998 RGS19P49795 217 aa23.25■■□□□ 1.31
HMGA2-211ENST00000545998 ITGB3BPQ13352 177 aaPredicted RBP23.25■■□□□ 1.31
HMGA2-211ENST00000545998 GNL2Q13823 731 aaKnown RBP23.25■■□□□ 1.31
HMGA2-211ENST00000545998 HSDL1Q3SXM5 330 aa23.25■■□□□ 1.31
HMGA2-211ENST00000545998 PPP4R3AQ6IN85 833 aa23.25■■□□□ 1.31
HMGA2-211ENST00000545998 ZEB2O60315 1214 aa23.24■■□□□ 1.31
HMGA2-211ENST00000545998 MMP3P08254 477 aa23.24■■□□□ 1.31
HMGA2-211ENST00000545998 GCFC2P16383 781 aaKnown RBP23.24■■□□□ 1.31
HMGA2-211ENST00000545998 BRDTQ58F21 947 aaPredicted RBP23.24■■□□□ 1.31
HMGA2-211ENST00000545998 SPATA33Q96N06 139 aa23.24■■□□□ 1.31
HMGA2-211ENST00000545998 NFASCO94856 1347 aa23.24■■□□□ 1.31
HMGA2-211ENST00000545998 IPO5O00410 1097 aaKnown RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 CCNT1O60563 726 aaKnown RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 HSP90AA1P07900 732 aaKnown RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 NAP1L4Q99733 375 aaKnown RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 SENP6Q9GZR1 1112 aaPredicted RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 DDX25Q9UHL0 483 aaKnown RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 A0A1W2PQ45 241 aaPredicted RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 A0A1W2PQY0 241 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 MSH4O15457 936 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 SLC37A4O43826 429 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 HOXD8P13378 290 aaPredicted RBP23.23■■□□□ 1.31
HMGA2-211ENST00000545998 SYT1P21579 422 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 MCTP1Q6DN14 999 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 FERMT2Q96AC1 680 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 ZNF577Q9BSK1 485 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 POLR3EQ9NVU0 708 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 TELO2Q9Y4R8 837 aa23.23■■□□□ 1.31
HMGA2-211ENST00000545998 SCN10AQ9Y5Y9 1956 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 WNT7AO00755 349 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 DHX15O43143 795 aaKnown RBP23.22■■□□□ 1.31
HMGA2-211ENST00000545998 PURAQ00577 322 aaKnown RBP23.22■■□□□ 1.31
HMGA2-211ENST00000545998 DGKDQ16760 1214 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 CXCL17Q6UXB2 119 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 UIMC1Q96RL1 719 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 GPR20Q99678 358 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 SDF4Q9BRK5 362 aa23.22■■□□□ 1.31
HMGA2-211ENST00000545998 JPH1Q9HDC5 661 aaPredicted RBP23.22■■□□□ 1.31
HMGA2-211ENST00000545998 ALPK3Q96L96 1907 aa23.21■■□□□ 1.31
HMGA2-211ENST00000545998 KPNA6O60684 536 aa23.21■■□□□ 1.31
HMGA2-211ENST00000545998 BECN1Q14457 450 aa23.21■■□□□ 1.31
HMGA2-211ENST00000545998 ETNPPLQ8TBG4 499 aa23.21■■□□□ 1.31
HMGA2-211ENST00000545998 SLC9A2Q9UBY0 812 aa23.21■■□□□ 1.31
HMGA2-211ENST00000545998 NOP56O00567 594 aaKnown RBP23.2■■□□□ 1.3
HMGA2-211ENST00000545998 PPFIA4O75335 1185 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 CABYRO75952 493 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 MYL3P08590 195 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 SPRYD3Q8NCJ5 442 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 SLC5A5Q92911 643 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 GLT1D1Q96MS3 346 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 TBC1D22BQ9NU19 505 aa23.2■■□□□ 1.3
HMGA2-211ENST00000545998 VPS37CA5D8V6 355 aaPredicted RBP23.19■■□□□ 1.3
HMGA2-211ENST00000545998 SP4Q02446 784 aa23.19■■□□□ 1.3
HMGA2-211ENST00000545998 KCNMB3Q9NPA1 279 aa23.19■■□□□ 1.3
HMGA2-211ENST00000545998 ELP1O95163 1332 aa23.19■■□□□ 1.3
HMGA2-211ENST00000545998 TRAPPC10P48553 1259 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 POTEDQ86YR6 584 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 MTG1Q9BT17 334 aaPredicted RBP23.18■■□□□ 1.3
HMGA2-211ENST00000545998 STARD7Q9NQZ5 370 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 GSTTP1A0A1W2PQM5 241 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 ATP2B1P20020 1258 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 TOB1P50616 345 aaPredicted RBP23.18■■□□□ 1.3
HMGA2-211ENST00000545998 SLC39A5Q6ZMH5 540 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 GJA10Q969M2 543 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 RIT2Q99578 217 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 NOL7Q9UMY1 257 aaKnown RBP23.18■■□□□ 1.3
HMGA2-211ENST00000545998 MTMR6Q9Y217 621 aa23.18■■□□□ 1.3
HMGA2-211ENST00000545998 DDX39AO00148 427 aaKnown RBP23.17■■□□□ 1.3
HMGA2-211ENST00000545998 TBX3O15119 743 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 STX6O43752 255 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 CCNE2O96020 404 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 ZNF286BP0CG31 522 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 ATN1P54259 1190 aaPredicted RBP23.17■■□□□ 1.3
HMGA2-211ENST00000545998 ACTR2P61160 394 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 SNX17Q15036 470 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 LRCH2Q5VUJ6 765 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 SEPT1Q8WYJ6 367 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 KAT2BQ92831 832 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 HAS1Q92839 578 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 FAM20AQ96MK3 541 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 WDR81Q562E7 1941 aa23.17■■□□□ 1.3
HMGA2-211ENST00000545998 NEMFO60524 1076 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 PSMD10O75832 226 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 TCF7P36402 384 aaPredicted RBP23.16■■□□□ 1.3
HMGA2-211ENST00000545998 TTC38Q5R3I4 469 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 C1orf53Q5VUE5 145 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 ZNF746Q6NUN9 644 aaPredicted RBP23.16■■□□□ 1.3
HMGA2-211ENST00000545998 C16orf70Q9BSU1 422 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 GRIN2DO15399 1336 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 PDE4DIPQ5VU43 2346 aa23.16■■□□□ 1.3
HMGA2-211ENST00000545998 A0A0U1RQG5 324 aaPredicted RBP23.15■■□□□ 1.3
HMGA2-211ENST00000545998 GAS7O60861 476 aa23.15■■□□□ 1.3
HMGA2-211ENST00000545998 ATG7O95352 703 aa23.15■■□□□ 1.3
HMGA2-211ENST00000545998 F2P00734 622 aa23.15■■□□□ 1.3
HMGA2-211ENST00000545998 LGALS2P05162 132 aa23.15■■□□□ 1.3
HMGA2-211ENST00000545998 MCM7P33993 719 aa23.15■■□□□ 1.3
HMGA2-211ENST00000545998 PSMC6P62333 389 aa23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms