RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 KCNH7Q9NS40 1196 aa13.07□□□□□ -0.32
YBX3-216ENST00000544622 GTF2IRD1Q9UHL9 959 aa13.07□□□□□ -0.32
YBX3-216ENST00000544622 UMODL1Q5DID0 1318 aa13.07□□□□□ -0.32
YBX3-216ENST00000544622 SORBS3O60504 671 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 DEXIO95424 95 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 CTDNEP1O95476 244 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 CSF2RAP15509 400 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 CYP2C18P33260 490 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 PSEN2P49810 448 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 AKAP17AQ02040 695 aaKnown RBP13.06□□□□□ -0.32
YBX3-216ENST00000544622 FPGSQ05932 587 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 SSRP1Q08945 709 aaKnown RBP13.06□□□□□ -0.32
YBX3-216ENST00000544622 STK3Q13188 491 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 HIC1Q14526 733 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 MFSD10Q14728 455 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 NPY5RQ15761 445 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 ME3Q16798 604 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 KIAA0753Q2KHM9 967 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 CEP55Q53EZ4 464 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 MCTP2Q6DN12 878 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 GDF6Q6KF10 455 aaPredicted RBP13.06□□□□□ -0.32
YBX3-216ENST00000544622 GPR153Q6NV75 609 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 FAM177A1Q8N128 213 aaPredicted RBP13.06□□□□□ -0.32
YBX3-216ENST00000544622 TMEM199Q8N511 208 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 LRCH3Q96II8 777 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 KATNAL1Q9BW62 490 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 WNT8AQ9H1J5 351 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 EHMT1Q9H9B1 1298 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 VPS54Q9P1Q0 977 aa13.06□□□□□ -0.32
YBX3-216ENST00000544622 MYH7BA7E2Y1 1941 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 IGLV3-22A0A075B6J6 115 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 FAM86B1E9PN63 330 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 H3BRB1 525 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 PITPNM1O00562 1244 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 LGALS2P05162 132 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 FAM86B2P0C5J1 330 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 ZNF286BP0CG31 522 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 ARP10275 920 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 CYP2C9P11712 490 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 NEK4P51957 841 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 ARHGAP4P98171 946 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 RASIP1Q5U651 963 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 JAKMIP3Q5VZ66 844 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 NIPA1Q7RTP0 329 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 TRIM22Q8IYM9 498 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 REXO1Q8N1G1 1221 aaKnown RBP13.05□□□□□ -0.32
YBX3-216ENST00000544622 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.05□□□□□ -0.327e-19■■□□□ 11.8
YBX3-216ENST00000544622 PPP1R12CQ9BZL4 782 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 SLKQ9H2G2 1235 aaPredicted RBP13.05□□□□□ -0.32
YBX3-216ENST00000544622 TUT1Q9H6E5 874 aaKnown RBP13.05□□□□□ -0.32
YBX3-216ENST00000544622 HDAC6Q9UBN7 1215 aa13.05□□□□□ -0.32
YBX3-216ENST00000544622 GSTTP1A0A1W2PQM5 241 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 CPLX1O14810 134 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 LARGE1O95461 756 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 FDPSP14324 419 aaKnown RBP13.04□□□□□ -0.32
YBX3-216ENST00000544622 CIITAP33076 1130 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 RBM25P49756 843 aaKnown RBP13.04□□□□□ -0.32
YBX3-216ENST00000544622 RBL2Q08999 1139 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 ITGB3BPQ13352 177 aaPredicted RBP13.04□□□□□ -0.32
YBX3-216ENST00000544622 PPIGQ13427 754 aaKnown RBP eCLIP13.04□□□□□ -0.329e-15■□□□□ 10.4
YBX3-216ENST00000544622 PTGISQ16647 500 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 FAM47CQ5HY64 1035 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 TMEM240Q5SV17 173 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 CCDC148Q8NFR7 591 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 BICD2Q8TD16 824 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 SEPT1Q8WYJ6 367 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 DHX38Q92620 1227 aaKnown RBP13.04□□□□□ -0.32
YBX3-216ENST00000544622 AIFM3Q96NN9 605 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 AGO4Q9HCK5 861 aaKnown RBP13.04□□□□□ -0.32
YBX3-216ENST00000544622 NFASCO94856 1347 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 STK36Q9NRP7 1315 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 COL6A3P12111 3177 aa13.04□□□□□ -0.32
YBX3-216ENST00000544622 NOP56O00567 594 aaKnown RBP13.03□□□□□ -0.32
YBX3-216ENST00000544622 DHX15O43143 795 aaKnown RBP13.03□□□□□ -0.32
YBX3-216ENST00000544622 ATG7O95352 703 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 IQCF3P0C7M6 154 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 CCL23P55773 120 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 ADAM17P78536 824 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 GPNMBQ14956 572 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 CPLX2Q6PUV4 134 aaKnown RBP13.03□□□□□ -0.32
YBX3-216ENST00000544622 C7orf31Q8N865 590 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 DAGLBQ8NCG7 672 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 RASGRP4Q8TDF6 673 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 ALG1Q9BT22 464 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 PHF20Q9BVI0 1012 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 RNPEPQ9H4A4 650 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 IL23AQ9NPF7 189 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 PCDHA4Q9UN74 947 aa13.03□□□□□ -0.32
YBX3-216ENST00000544622 IGKV6D-21A0A0A0MT36 114 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 CDKL5O76039 1030 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 TCF7P36402 384 aaPredicted RBP13.02□□□□□ -0.33
YBX3-216ENST00000544622 USP11P51784 963 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 ZNF200P98182 395 aaPredicted RBP13.02□□□□□ -0.33
YBX3-216ENST00000544622 ST3GAL1Q11201 340 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 PTK7Q13308 1070 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 TRIM71Q2Q1W2 868 aaKnown RBP13.02□□□□□ -0.33
YBX3-216ENST00000544622 GALNT17Q6IS24 598 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 TRAF7Q6Q0C0 670 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 ZNF365Q70YC5 407 aa13.02□□□□□ -0.33
YBX3-216ENST00000544622 CAGE1Q8TC20 777 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms