RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 RAB21Q9UL25 225 aa19.97■□□□□ 0.79
VIM-209ENST00000544301 COL2A1P02458 1487 aaPredicted RBP19.96■□□□□ 0.79
VIM-209ENST00000544301 A0A1W2PRG0 241 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 POTEFA5A3E0 1075 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 POTEIP0CG38 1075 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 VAV2P52735 878 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 PAPD7Q5XG87 772 aaKnown RBP19.96■□□□□ 0.79
VIM-209ENST00000544301 HAUS3Q68CZ6 603 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 CC2D2BQ6DHV5 1058 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 POTEGQ6S5H5 508 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 POTEEQ6S8J3 1075 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 CATSPER3Q86XQ3 398 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 CEP63Q96MT8 703 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 CSRNP1Q96S65 589 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 DUSP10Q9Y6W6 482 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 FRMD3A2A2Y4 597 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 SPDYE3A6NKU9 549 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 YDJCA8MPS7 323 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 FAM86B1E9PN63 330 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 OPLAHO14841 1288 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 FAM86B2P0C5J1 330 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 TAL1P17542 331 aaPredicted RBP19.96■□□□□ 0.79
VIM-209ENST00000544301 SPA17Q15506 151 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 TERF2Q15554 542 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 KRT26Q7Z3Y9 468 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 BAP1Q92560 729 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 FUT8Q9BYC5 575 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 PRDM4Q9UKN5 801 aa19.96■□□□□ 0.79
VIM-209ENST00000544301 LRRC53A6NM62 1247 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 RAD51AP2Q09MP3 1159 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 KCNMA1Q12791 1236 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 LONRF2Q1L5Z9 754 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 CCDC40Q4G0X9 1142 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 RRAGAQ7L523 313 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 NELFCDQ8IXH7 590 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 CCDC155Q8N6L0 562 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 SCFD1Q8WVM8 642 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 HNRNPLLQ8WVV9 542 aaKnown RBP19.95■□□□□ 0.78
VIM-209ENST00000544301 TANGO6Q9C0B7 1094 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 KCTD10Q9H3F6 313 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 SAR1BQ9Y6B6 198 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 PITPNM2Q9BZ72 1349 aa19.95■□□□□ 0.78
VIM-209ENST00000544301 EIF4A3P38919 411 aaKnown RBP19.94■□□□□ 0.78
VIM-209ENST00000544301 KIF5AQ12840 1032 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 NEK11Q8NG66 645 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 ERMNQ8TAM6 284 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 EDEM3Q9BZQ6 932 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 UBXN6Q9BZV1 441 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 TSGA10Q9BZW7 698 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 KRT18P05783 430 aaKnown RBP19.94■□□□□ 0.78
VIM-209ENST00000544301 RHOXF2BP0C7M4 288 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 SPATA31C1P0DKV0 1188 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 RPA1P27694 616 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 CIITAP33076 1130 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 PSMC6P62333 389 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 NOA1Q8NC60 698 aaKnown RBP19.94■□□□□ 0.78
VIM-209ENST00000544301 SMCR8Q8TEV9 937 aaPredicted RBP19.94■□□□□ 0.78
VIM-209ENST00000544301 FAM20AQ96MK3 541 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 RHOXF2Q9BQY4 288 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 EMILIN3Q9NT22 766 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 PRR12Q9ULL5 1215 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 SYNPO2Q9UMS6 1093 aa19.94■□□□□ 0.78
VIM-209ENST00000544301 PPIP5K2O43314 1243 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 KIF20AO95235 890 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 LCA5LO95447 670 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 GNA14O95837 355 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 HOXA13P31271 388 aaPredicted RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 KIF11P52732 1056 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 MARSP56192 900 aaKnown RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 PDXDC1Q6P996 788 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 SPICE1Q8N0Z3 855 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 SUPT20HQ8NEM7 779 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.93■□□□□ 0.78
VIM-209ENST00000544301 PCDHA13Q9Y5I0 950 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 MEIS1O00470 390 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 MSH4O15457 936 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 GIT2Q14161 759 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 ZC3H3Q8IXZ2 948 aaKnown RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 SECISBP2LQ93073 1101 aaKnown RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 IFIH1Q9BYX4 1025 aaKnown RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 HERC5Q9UII4 1024 aaKnown RBP19.93■□□□□ 0.78
VIM-209ENST00000544301 DNM3Q9UQ16 869 aa19.93■□□□□ 0.78
VIM-209ENST00000544301 MACROD2A1Z1Q3 448 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 SRGAP2O75044 1071 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 BEND6Q5SZJ8 279 aaPredicted RBP19.92■□□□□ 0.78
VIM-209ENST00000544301 ZNF772Q68DY9 489 aaPredicted RBP19.92■□□□□ 0.78
VIM-209ENST00000544301 ARHGAP27Q6ZUM4 889 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 TRIM59Q8IWR1 403 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 SYT2Q8N9I0 419 aaPredicted RBP19.92■□□□□ 0.78
VIM-209ENST00000544301 ZHX3Q9H4I2 956 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 STK24Q9Y6E0 443 aa19.92■□□□□ 0.78
VIM-209ENST00000544301 ANO9A1A5B4 782 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 TCP10L2B9ZVM9 353 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 PIK3CDO00329 1044 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 USO1O60763 962 aaKnown RBP19.91■□□□□ 0.78
VIM-209ENST00000544301 CYP3A4P08684 503 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 ECE1P42892 770 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 PABPC4Q13310 644 aaKnown RBP eCLIP19.91■□□□□ 0.781e-7■■■□□ 16.8
VIM-209ENST00000544301 CACNA2D4Q7Z3S7 1137 aa19.91■□□□□ 0.78
VIM-209ENST00000544301 DEF6Q9H4E7 631 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms