RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 A0A1B0GW55 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 ATP8B1O43520 1251 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 MOCS3O95396 460 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L2P0CJ85 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L3P0CJ86 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L4P0CJ87 422 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L5P0CJ88 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L6P0CJ89 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4L7P0CJ90 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DDX42Q86XP3 938 aaKnown RBP eCLIP11.22□□□□□ -0.61
PCDH9-204ENST00000544246 ZFYVE19Q96K21 471 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 PHACTR3Q96KR7 559 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 DUX4Q9UBX2 424 aa11.22□□□□□ -0.61
PCDH9-204ENST00000544246 EPN1Q9Y6I3 576 aaPredicted RBP11.22□□□□□ -0.61
PCDH9-204ENST00000544246 CTNND1O60716 968 aaKnown RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 PLTPP55058 493 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 DYNLT1P63172 113 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 CCDC85BQ15834 202 aaPredicted RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 HABP4Q5JVS0 413 aaKnown RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 NEK8Q86SG6 692 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 JPH2Q9BR39 696 aaPredicted RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 EPB41L5Q9HCM4 733 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 MRPL40Q9NQ50 206 aaKnown RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 FRMPD2Q68DX3 1309 aaPredicted RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 ZNF532Q9HCE3 1301 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 ANXA13P27216 316 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 GRIN1Q05586 938 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 GADL1Q6ZQY3 521 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 GANCQ8TET4 914 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 EPAS1Q99814 870 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 SLC39A2Q9NP94 309 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 STRIP2Q9ULQ0 834 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 THRAP3Q9Y2W1 955 aaKnown RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 MRFAP1Q9Y605 127 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 SLFN14P0C7P3 912 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 EIF4A2Q14240 407 aaKnown RBP11.21□□□□□ -0.61
PCDH9-204ENST00000544246 PLA2G4DQ86XP0 818 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 FAM89AQ96GI7 184 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 FAM227BQ96M60 508 aa11.21□□□□□ -0.61
PCDH9-204ENST00000544246 PAMP19021 973 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 HADHAP40939 763 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 NSUN2Q08J23 767 aaKnown RBP eCLIP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 EAPPQ56P03 285 aaPredicted RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 KHDRBS2Q5VWX1 349 aaKnown RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 GALNT17Q6IS24 598 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 CRLF3Q8IUI8 442 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 TAGAPQ8N103 731 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 RABGGTAQ92696 567 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 DBNDD2Q9BQY9 259 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 DBNLQ9UJU6 430 aaKnown RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 ABCC1P33527 1531 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 RNMTO43148 476 aaKnown RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 DYNC1I2Q13409 638 aaKnown RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 SPATA1Q5VX52 437 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 NCAPG2Q86XI2 1143 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 LRRC8AQ8IWT6 810 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 TBC1D22AQ8WUA7 517 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 CACTINQ8WUQ7 758 aaKnown RBP11.21□□□□□ -0.62
PCDH9-204ENST00000544246 FAM149B1Q96BN6 582 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 GCNAQ96QF7 691 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 USP40Q9NVE5 1235 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 PLEKHG1Q9ULL1 1385 aa11.21□□□□□ -0.62
PCDH9-204ENST00000544246 AFF2P51816 1311 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SH3TC1Q8TE82 1336 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 ASXL1Q8IXJ9 1541 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 EXOC1LA0A1B0GW35 172 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 WDR91A4D1P6 747 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 MDM2Q00987 491 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 TAF1BQ53T94 588 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 ZSCAN10Q96SZ4 725 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 HINFPQ9BQA5 517 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 METTL22Q9BUU2 404 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 TBK1Q9UHD2 729 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 PGRMC1O00264 195 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SNX2O60749 519 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 DCTN3O75935 186 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 GFAPP14136 432 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 DRP2Q13474 957 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 FSCBQ5H9T9 825 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SOS2Q07890 1332 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SRGAP2CP0DJJ0 459 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 STAT2P52630 851 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 COPB1P53618 953 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 KCNA1Q09470 495 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 ZC3H18Q86VM9 953 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 NOSTRINQ8IVI9 506 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SYT2Q8N9I0 419 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 DYDC2Q96IM9 177 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 CNOT6LQ96LI5 555 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 ARAP3Q8WWN8 1544 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 C2orf54Q08AI8 447 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 PBKQ96KB5 322 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 TESK2Q96S53 571 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 MAGEF1Q9HAY2 307 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 SEPT9Q9UHD8 586 aaPredicted RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 E7EWF7 191 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 HSPD1P10809 573 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 PSMC2P35998 433 aaKnown RBP11.2□□□□□ -0.62
PCDH9-204ENST00000544246 ACRBPQ8NEB7 543 aa11.2□□□□□ -0.62
PCDH9-204ENST00000544246 KLC2Q9H0B6 622 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms