RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PIGSQ96S52 555 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 NT5C3AQ9H0P0 336 aa15.13■□□□□ 0.01
VPS33A-208ENST00000543633 SRP68Q9UHB9 627 aaKnown RBP15.13■□□□□ 0.01
VPS33A-208ENST00000543633 GPR75-ASB3A0A0A6YYF3 556 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 ANXA13P27216 316 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 TM4SF1P30408 202 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 TNNC1P63316 161 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 RASSF7Q02833 373 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 GFPT1Q06210 699 aaPredicted RBP15.12■□□□□ 0.01
VPS33A-208ENST00000543633 COASYQ13057 564 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 CCDC40Q4G0X9 1142 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 FAM26FQ5R3K3 315 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 FAM83BQ5T0W9 1011 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 CFAP58Q5T655 872 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 MEI1Q5TIA1 1274 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 TRIM59Q8IWR1 403 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 DNAJC19Q96DA6 116 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 INPP4AQ96PE3 977 aaPredicted RBP15.12■□□□□ 0.01
VPS33A-208ENST00000543633 ZIM3Q96PE6 472 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 AIPL1Q9NZN9 384 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 BIN2Q9UBW5 565 aaPredicted RBP15.12■□□□□ 0.01
VPS33A-208ENST00000543633 FAM169AQ9Y6X4 670 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 PLSCR1O15162 318 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 SLC7A5Q01650 507 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 SLC4A8Q2Y0W8 1093 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 USP17L2Q6R6M4 530 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 DYMQ7RTS9 669 aa15.12■□□□□ 0.01
VPS33A-208ENST00000543633 VGLL3A8MV65 326 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 NCK2O43639 380 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 SLC37A4O43826 429 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 NOL4O94818 638 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 HEXIM1O94992 359 aaKnown RBP15.11■□□□□ 0.01
VPS33A-208ENST00000543633 MYBP10242 640 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 MAPKAPK5Q8IW41 473 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 SLF2Q8IX21 1173 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 IPO4Q8TEX9 1081 aaKnown RBP15.11■□□□□ 0.01
VPS33A-208ENST00000543633 ZBTB9Q96C00 473 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 FAM163AQ96GL9 167 aaPredicted RBP15.11■□□□□ 0.01
VPS33A-208ENST00000543633 ZFP91Q96JP5 570 aaPredicted RBP15.11■□□□□ 0.01
VPS33A-208ENST00000543633 TANGO6Q9C0B7 1094 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 BMP2KQ9NSY1 1161 aaPredicted RBP15.11■□□□□ 0.01
VPS33A-208ENST00000543633 GGA2Q9UJY4 613 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 ARFGEF1Q9Y6D6 1849 aa15.11■□□□□ 0.01
VPS33A-208ENST00000543633 HMGB1P1B2RPK0 211 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TLR2O60603 784 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 SNHG28P0DPA3 235 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 CXCR5P32302 372 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 MATR3P43243 847 aaKnown RBP eCLIP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 DIXDC1Q155Q3 683 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 IFI16Q16666 785 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 EDRF1Q3B7T1 1238 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 LRIG3Q6UXM1 1119 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 BICDL1Q6ZP65 573 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 CCDC65Q8IXS2 484 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 ARL8AQ96BM9 186 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 CEP95Q96GE4 821 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 LSM14BQ9BX40 385 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 PLEKHA4Q9H4M7 779 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TNS1Q9HBL0 1735 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 PALMO75781 387 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 ERLIN2O94905 339 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TDP2O95551 362 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 PDHBP11177 359 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 HSPA9P38646 679 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 BTDP43251 543 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 GRAPQ13588 217 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 CDC37Q16543 378 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 MMS22LQ6ZRQ5 1243 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 MICALCLQ6ZW33 695 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TEX11Q8IYF3 940 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 GRAPLQ8TC17 118 aaPredicted RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 PBKQ96KB5 322 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 CALR3Q96L12 384 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TMEM260Q9NX78 707 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 SAP30BPQ9UHR5 308 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 TMEM59LQ9UK28 342 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 MTMR7Q9Y216 660 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 BZW2Q9Y6E2 419 aaKnown RBP15.1■□□□□ 0.01
VPS33A-208ENST00000543633 MYO3BQ8WXR4 1341 aa15.1■□□□□ 0.01
VPS33A-208ENST00000543633 POTEMA6NI47 508 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 TRAF5O00463 557 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 GAKO14976 1311 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 EDIL3O43854 480 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 ZPR1O75312 459 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 GLI1P08151 1106 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 ADRA2BP18089 450 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 CLK2P49760 499 aaKnown RBP15.09■□□□□ 0.01
VPS33A-208ENST00000543633 ASIC2Q16515 512 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 TRAPPC3LQ5T215 181 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 YTHDF3Q7Z739 585 aaKnown RBP15.09■□□□□ 0.01
VPS33A-208ENST00000543633 CCDC43Q96MW1 224 aaKnown RBP15.09■□□□□ 0.01
VPS33A-208ENST00000543633 PITPNM2Q9BZ72 1349 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 GLT8D2Q9H1C3 349 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 GANQ9H2C0 597 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 CPVLQ9H3G5 476 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 PANK4Q9NVE7 773 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 EHD2Q9NZN4 543 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 SWAP70Q9UH65 585 aa15.09■□□□□ 0.01
VPS33A-208ENST00000543633 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.09■□□□□ 0.01
VPS33A-208ENST00000543633 BHMG1C9JSJ3 638 aaPredicted RBP15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms