RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 RASSF10A6NK89 507 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L15C9J2P7 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L13C9JLJ4 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L11C9JVI0 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L18D6R9N7 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L22D6RA61 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L17D6RBQ6 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L19D6RCP7 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L20D6RJB6 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 RNF225M0QZC1 329 aaPredicted RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 GH2P01242 217 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 CYP11B2P19099 503 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L24Q0WX57 530 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 USP17L6PQ6QN14 398 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 TMCO3Q6UWJ1 677 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 MSANTD4Q8NCY6 345 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 ZBED3Q96IU2 234 aaPredicted RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 PRMT6Q96LA8 375 aaPredicted RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 LZTFL1Q9NQ48 299 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 MAP3K20Q9NYL2 800 aaKnown RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 ZNF70Q9UC06 446 aaPredicted RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 PRR12Q9ULL5 1215 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 DNM3Q9UQ16 869 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 TRAF3IP3Q9Y228 551 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 MRPL11Q9Y3B7 192 aaKnown RBP10.93□□□□□ -0.66
SS18-205ENST00000542420 MYH11P35749 1972 aa10.93□□□□□ -0.66
SS18-205ENST00000542420 CCDC151A5D8V7 595 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 ZRANB2O95218 330 aaKnown RBP eCLIP10.92□□□□□ -0.66
SS18-205ENST00000542420 ANXA13P27216 316 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 VAV2P52735 878 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 SETQ01105 290 aaPredicted RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 AMPD2Q01433 879 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 NAA30Q147X3 362 aaPredicted RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 DLGAP5Q15398 846 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 ECM1Q16610 540 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 PAPD7Q5XG87 772 aaKnown RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 MSL1Q68DK7 614 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 SLC35F6Q8N357 371 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 OGFOD1Q8N543 542 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 ACRBPQ8NEB7 543 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 NEK9Q8TD19 979 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 RUBCNQ92622 972 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 MAF1Q9H063 256 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 FEM1BQ9UK73 627 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 ZBTB21Q9ULJ3 1066 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 MYO6Q9UM54 1294 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 KIAA1024Q9UPX6 916 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 REXO2Q9Y3B8 237 aaKnown RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 CNTNAP1P78357 1384 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 PARP14Q460N5 1801 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 USO1O60763 962 aaKnown RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 EYA4O95677 639 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 IDEP14735 1019 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 CHRNA5P30532 468 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 CHMP4BP1P59074 171 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 CKAP4Q07065 602 aaKnown RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 PPP2R5CQ13362 524 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 NIPA1Q7RTP0 329 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 DYMQ7RTS9 669 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 GPBP1Q86WP2 473 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 CHP1Q99653 195 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 SLF1Q9BQI6 1058 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 GBP3Q9H0R5 595 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 KCTD10Q9H3F6 313 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 VCPKMTQ9H867 229 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 NHEJ1Q9H9Q4 299 aaPredicted RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 LUC7LQ9NQ29 371 aaKnown RBP10.92□□□□□ -0.66
SS18-205ENST00000542420 CEP72Q9P209 647 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 SEL1LQ9UBV2 794 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 VAV3Q9UKW4 847 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 RAB21Q9UL25 225 aa10.92□□□□□ -0.66
SS18-205ENST00000542420 PDXKO00764 312 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 EIF3DO15371 548 aaKnown RBP eCLIP10.91□□□□□ -0.66
SS18-205ENST00000542420 SLC16A3O15427 465 aaKnown RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 PJA2O43164 708 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 COBLO75128 1261 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 PRLRP16471 622 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 MCM3P25205 808 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 CLCN6P51797 869 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 CACNB3P54284 484 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 HERVK_113P62684 666 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 EPM2AIP1Q7L775 607 aaPredicted RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 TRAPPC11Q7Z392 1133 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 KRT26Q7Z3Y9 468 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 FRMD5Q7Z6J6 570 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 TRIM59Q8IWR1 403 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 CCDC155Q8N6L0 562 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 OLFML3Q9NRN5 406 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 RBAK-RBAKDNI3L0D1 243 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 PES1O00541 588 aaKnown RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 MED24O75448 989 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 GDF11O95390 407 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 IRX3P78415 501 aaPredicted RBP10.91□□□□□ -0.66
SS18-205ENST00000542420 ITIH3Q06033 890 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 DOCK1Q14185 1865 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 SPA17Q15506 151 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 TERF2Q15554 542 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 CATSPER3Q86XQ3 398 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 NEK11Q8NG66 645 aa10.91□□□□□ -0.66
SS18-205ENST00000542420 SLC5A5Q92911 643 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms