RNA–Protein interactions for RNA: ENST00000541351.3

YBX3-211, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-211	ENST00000541351	STAG3L1	P0CL83	205 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	TSPY3	P0CV98	308 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	TSPY8	P0CW00	308 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	TEC	P42680	631 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	ARHGAP1	Q07960	439 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	DUSP6	Q16828	381 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	SBK1	Q52WX2	424 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	RCSD1	Q6JBY9	416 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	ZSCAN25	Q6NSZ9	544 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	CCDC62	Q6P9F0	684 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	GIMAP6	Q6P9H5	292 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	ZDHHC14	Q8IZN3	488 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	KLHL23	Q8NBE8	558 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	EAF2	Q96CJ1	260 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	ZNF689	Q96CS4	500 aa	Predicted RBP	11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	PURB	Q96QR8	312 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	MRS2	Q9HD23	443 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	TLR7	Q9NYK1	1049 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	PRR12	Q9ULL5	1215 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	UST	Q9Y2C2	406 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351		R4GN57	208 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	FASN	P49327	2511 aa	Known RBP	11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	OTOGL	Q3ZCN5	2332 aa		11.18	□□□□□ -0.62
YBX3-211	ENST00000541351	ZBED9	Q6R2W3	1325 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	IGKV6D-41	A0A0C4DH26	115 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	GOLIM4	O00461	696 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	SPTLC1	O15269	473 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	TBC1D8B	Q0IIM8	1120 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	POLA2	Q14181	598 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	STXBP2	Q15833	593 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	SEPT14	Q6ZU15	432 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	DDX1	Q92499	740 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	CASP10	Q92851	521 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	ACSF2	Q96CM8	615 aa	Predicted RBP	11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	S1PR5	Q9H228	398 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	RC3H2	Q9HBD1	1191 aa	Known RBP	11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	USP24	Q9UPU5	2620 aa		11.17	□□□□□ -0.62
YBX3-211	ENST00000541351	GREB1L	Q9C091	1923 aa	Predicted RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	SOBP	A7XYQ1	873 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	C2CD4D	B7Z1M9	353 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	NFIB	O00712	420 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	IPO8	O15397	1037 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	DGKI	O75912	1065 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	SLC3A2	P08195	630 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	CTSH	P09668	335 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	MCC	P23508	829 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	RARS	P54136	660 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	NONO	Q15233	471 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	LY6K	Q17RY6	165 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	VARS2	Q5ST30	1063 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	KCNV1	Q6PIU1	500 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	RSPH3	Q86UC2	560 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	AACS	Q86V21	672 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	SSH3	Q8TE77	659 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	WNT8B	Q93098	351 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	DNAJC2	Q99543	621 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	PUF60	Q9UHX1	559 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	ANGPTL2	Q9UKU9	493 aa		11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	NOP58	Q9Y2X3	529 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	MRPL42	Q9Y6G3	142 aa	Known RBP	11.16	□□□□□ -0.62
YBX3-211	ENST00000541351	ATG2A	Q2TAZ0	1938 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	MYH4	Q9Y623	1939 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	MINDY4B	A8MYZ0	360 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	PER2	O15055	1255 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	ARIH2	O95376	493 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	ZNF286B	P0CG31	522 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	DNAJB1	P25685	340 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	ADD2	P35612	726 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	RPS6	P62753	249 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	ZNF200	P98182	395 aa	Predicted RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	TDG	Q13569	410 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	BMS1	Q14692	1282 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	UBE3C	Q15386	1083 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	SPOUT1	Q5T280	376 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	KCTD1	Q719H9	257 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	SIX5	Q8N196	739 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	DCLK2	Q8N568	766 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	NSUN6	Q8TEA1	469 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	IWS1	Q96ST2	819 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	GPR20	Q99678	358 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	FTHL17	Q9BXU8	183 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	RANBP17	Q9H2T7	1088 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	ADAM7	Q9H2U9	754 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	NGRN	Q9NPE2	291 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	CYP26B1	Q9NR63	512 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	MRVI1	Q9Y6F6	885 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	WDR87	Q6ZQQ6	2873 aa		11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.15	□□□□□ -0.62
YBX3-211	ENST00000541351	PLIN4	Q96Q06	1357 aa		11.15	□□□□□ -0.63
YBX3-211	ENST00000541351	DCDC2B	A2VCK2	349 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	PI15	O43692	258 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	RPLP2	P05387	115 aa	Known RBP	11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	CCDC96	Q2M329	555 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	HSP90AB4P	Q58FF6	505 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	ATAT1	Q5SQI0	421 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	SLC30A10	Q6XR72	485 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	NPAS4	Q8IUM7	802 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	NEDD1	Q8NHV4	660 aa		11.14	□□□□□ -0.63
YBX3-211	ENST00000541351	LIMD1	Q9UGP4	676 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms