RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CCDC120Q96HB5 630 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 HSPA12BQ96MM6 686 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 SLC9A7Q96T83 725 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 ORAI3Q9BRQ5 295 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 CLIC5Q9NZA1 410 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 LRP2BPQ9P2M1 347 aa6.55□□□□□ -1.36
PRKDC-209ENST00000540819 DDX20Q9UHI6 824 aaKnown RBP6.55□□□□□ -1.36
PRKDC-209ENST00000540819 SAP30BPQ9UHR5 308 aaKnown RBP6.55□□□□□ -1.36
PRKDC-209ENST00000540819 PRAMEF27A3QJZ7 478 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 SLC22A31A6NKX4 558 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 C9IYK1 514 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 F5H423 210 aaPredicted RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 PRODHO43272 600 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 ASGR2P07307 311 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 GTF2A2P52657 109 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 RBM10P98175 930 aaKnown RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 PTPN11Q06124 597 aaPredicted RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 SART3Q15020 963 aaKnown RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 ELF2Q15723 593 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 FYB2Q5VWT5 728 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 CDCA2Q69YH5 1023 aaPredicted RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 PPP4R3AQ6IN85 833 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 LVRNQ6Q4G3 990 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 SYDE1Q6ZW31 735 aaPredicted RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 CHST15Q7LFX5 561 aaPredicted RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 HDXQ7Z353 690 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 SUGP1Q8IWZ8 645 aaKnown RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 PARD3BQ8TEW8 1205 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 OSBP2Q969R2 916 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 TBATAQ96M53 351 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 NOL7Q9UMY1 257 aaKnown RBP6.54□□□□□ -1.36
PRKDC-209ENST00000540819 PTPN22Q9Y2R2 807 aa6.54□□□□□ -1.36
PRKDC-209ENST00000540819 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.53□□□□□ -1.36
PRKDC-209ENST00000540819 FZD9O00144 591 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 HSPA6P17066 643 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 IARSP41252 1262 aaKnown RBP6.53□□□□□ -1.36
PRKDC-209ENST00000540819 ERVK-21P61565 698 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 TBX2Q13207 712 aaPredicted RBP6.53□□□□□ -1.36
PRKDC-209ENST00000540819 CCDC96Q2M329 555 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 XRRA1Q6P2D8 792 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 KRT77Q7Z794 578 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 MYLK4Q86YV6 388 aaPredicted RBP6.53□□□□□ -1.36
PRKDC-209ENST00000540819 MFSD2AQ8NA29 543 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 HSPBAP1Q96EW2 488 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 CDK5RAP3Q96JB5 506 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 IFT122Q9HBG6 1241 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 ATP13A1Q9HD20 1204 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 REV1Q9UBZ9 1251 aa6.53□□□□□ -1.36
PRKDC-209ENST00000540819 EVLQ9UI08 416 aaPredicted RBP6.53□□□□□ -1.36
PRKDC-209ENST00000540819 M0R2C6 588 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 GFRA2O00451 464 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 SLITRK5O94991 958 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ZRANB2O95218 330 aaKnown RBP eCLIP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 CAPNS1P04632 268 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ITGAVP06756 1048 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ZKSCAN1P17029 563 aaPredicted RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 GDNFP39905 211 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ECE1P42892 770 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ALDH5A1P51649 535 aaPredicted RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 EIF5P55010 431 aaKnown RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 ETF1P62495 437 aaKnown RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 KLF1Q13351 362 aaPredicted RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 PRR23BQ6ZRT6 265 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 CATIPQ7Z7H3 387 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 PNMA8AQ86V59 439 aaPredicted RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 CMTR2Q8IYT2 770 aaKnown RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 MFSD4AQ8N468 514 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 POF1BQ8WVV4 589 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 SCLYQ96I15 445 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 WNK4Q96J92 1243 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 MAGEB10Q96LZ2 347 aaPredicted RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 LRGUKQ96M69 825 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 MIPEPQ99797 713 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 NAA15Q9BXJ9 866 aaKnown RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 NMRK2Q9NPI5 230 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 SEMA3GQ9NS98 782 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 TRMT13Q9NUP7 481 aaKnown RBP6.52□□□□□ -1.37
PRKDC-209ENST00000540819 HDAC9Q9UKV0 1011 aa6.52□□□□□ -1.37
PRKDC-209ENST00000540819 RPGRIP1LQ68CZ1 1315 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 TCRBV16S1A1N1A0A5B0 115 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 PRSS47A8MTI9 375 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 H3BS24 57 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 NFIBO00712 420 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 ULK1O75385 1050 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 TSPAN15O95858 294 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 CBX7O95931 251 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 MT-CO1P00395 513 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 CFBP00751 764 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 RHCEP18577 417 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 CYP7A1P22680 504 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 CFPP27918 469 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 IL2P60568 153 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 RHDQ02161 417 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 PDE1CQ14123 709 aaPredicted RBP6.51□□□□□ -1.37
PRKDC-209ENST00000540819 INPP5AQ14642 412 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 PCBP2Q15366 365 aaKnown RBP eCLIP6.51□□□□□ -1.37
PRKDC-209ENST00000540819 PDCD2Q16342 344 aaPredicted RBP6.51□□□□□ -1.37
PRKDC-209ENST00000540819 CC2D1AQ6P1N0 951 aaPredicted RBP6.51□□□□□ -1.37
PRKDC-209ENST00000540819 SAPCD2Q86UD0 394 aa6.51□□□□□ -1.37
PRKDC-209ENST00000540819 ZNF227Q86WZ6 799 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms