RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 TUBB2AQ13885 445 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 TUBB2BQ9BVA1 445 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 DEPDC5O75140 1603 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 NSFP46459 744 aaKnown RBP15.55■□□□□ 0.08
COLCA1-204ENST00000540738 ARHGAP4P98171 946 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 GBA2Q9HCG7 927 aaPredicted RBP15.55■□□□□ 0.08
COLCA1-204ENST00000540738 ALDH1A1P00352 501 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 ARPP19P56211 112 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 EXOC3L4Q17RC7 722 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 SCYL2Q6P3W7 929 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 REREQ9P2R6 1566 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 NR5A1Q13285 461 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 U2AF1L4Q8WU68 220 aaKnown RBP15.55■□□□□ 0.08
COLCA1-204ENST00000540738 GCOM2Q9BZD3 368 aaPredicted RBP15.55■□□□□ 0.08
COLCA1-204ENST00000540738 PXDNLA1KZ92 1463 aa15.55■□□□□ 0.08
COLCA1-204ENST00000540738 MED7O43513 233 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 THEM5Q8N1Q8 247 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 OR6J1Q8NGC5 347 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 VCPKMTQ9H867 229 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 ZBTB33Q86T24 672 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 ADGRF4Q8IZF3 695 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 ELMOD1Q8N336 334 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 MSTO1Q9BUK6 570 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 TTLL3Q9Y4R7 772 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 PCDHB4Q9Y5E5 795 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 KCNJ6P48051 423 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 PPP1R21Q6ZMI0 780 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 CCDC25Q86WR0 208 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 TBC1D31Q96DN5 1066 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 CBX8Q9HC52 389 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 PRDM5Q9NQX1 630 aaPredicted RBP15.54■□□□□ 0.08
COLCA1-204ENST00000540738 RAB20Q9NX57 234 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 PFASO15067 1338 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 FKBP3Q00688 224 aaKnown RBP15.54■□□□□ 0.08
COLCA1-204ENST00000540738 CTTNQ14247 550 aaKnown RBP15.54■□□□□ 0.08
COLCA1-204ENST00000540738 SPATA1Q5VX52 437 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 MICALCLQ6ZW33 695 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 SCYL3Q8IZE3 742 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 TRIM11Q96F44 468 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 TIGD1Q96MW7 591 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 COL5A2P05997 1499 aaPredicted RBP15.54■□□□□ 0.08
COLCA1-204ENST00000540738 TXNP10599 105 aaKnown RBP15.54■□□□□ 0.08
COLCA1-204ENST00000540738 KIAA1586Q9HCI6 787 aa15.54■□□□□ 0.08
COLCA1-204ENST00000540738 PEX26Q7Z412 305 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 MTMR4Q9NYA4 1195 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 OPA1O60313 960 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 DTNBO60941 627 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 P4HBP07237 508 aaKnown RBP15.53■□□□□ 0.08
COLCA1-204ENST00000540738 SLFN14P0C7P3 912 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 MAP7D3Q8IWC1 876 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 PPP1R16BQ96T49 567 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 MEGF6O75095 1541 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 ERO1BQ86YB8 467 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 CHST13Q8NET6 341 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 PRIMPOLQ96LW4 560 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 LRRC4Q9HBW1 653 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 ALDH3A1P30838 453 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 SARNPP82979 210 aaKnown RBP15.53■□□□□ 0.08
COLCA1-204ENST00000540738 USP17L6PQ6QN14 398 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 OR8K1Q8NGG5 319 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 BHMT2Q9H2M3 363 aa15.53■□□□□ 0.08
COLCA1-204ENST00000540738 KIF28PB7ZC32 967 aa15.52■□□□□ 0.08
COLCA1-204ENST00000540738 XPAP23025 273 aaPredicted RBP15.52■□□□□ 0.08
COLCA1-204ENST00000540738 TAOK1Q7L7X3 1001 aa15.52■□□□□ 0.08
COLCA1-204ENST00000540738 KRT10P13645 584 aa15.52■□□□□ 0.08
COLCA1-204ENST00000540738 QARSP47897 775 aaKnown RBP15.52■□□□□ 0.08
COLCA1-204ENST00000540738 CUL4BQ13620 913 aa15.52■□□□□ 0.08
COLCA1-204ENST00000540738 NSRP1Q9H0G5 558 aaKnown RBP15.52■□□□□ 0.08
COLCA1-204ENST00000540738 SLC8A2Q9UPR5 921 aa15.52■□□□□ 0.08
COLCA1-204ENST00000540738 NOC2LQ9Y3T9 749 aaKnown RBP15.52■□□□□ 0.08
COLCA1-204ENST00000540738 SRPRBQ9Y5M8 271 aaKnown RBP15.52■□□□□ 0.08
COLCA1-204ENST00000540738 GPR75-ASB3A0A0A6YYF3 556 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 PFDN6O15212 129 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 ARHGAP6O43182 974 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 RPS6KA1Q15418 735 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 MTRQ99707 1265 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 NAPGQ99747 312 aaPredicted RBP15.52■□□□□ 0.07
COLCA1-204ENST00000540738 BZW2Q9Y6E2 419 aaKnown RBP15.52■□□□□ 0.07
COLCA1-204ENST00000540738 RARBP10826 455 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 CYP2B6P20813 491 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 GCLCP48506 637 aaPredicted RBP15.52■□□□□ 0.07
COLCA1-204ENST00000540738 PSMC5P62195 406 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 NOLC1Q14978 699 aaKnown RBP eCLIP15.52■□□□□ 0.07
COLCA1-204ENST00000540738 PPP4R3CPQ6ZMV5 832 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 CCDC89Q8N998 374 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 EMILIN3Q9NT22 766 aa15.52■□□□□ 0.07
COLCA1-204ENST00000540738 USP11P51784 963 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 FAM149B1Q96BN6 582 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 AFPP02771 609 aaKnown RBP15.51■□□□□ 0.07
COLCA1-204ENST00000540738 TYW1BQ6NUM6 668 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 CCT6BQ92526 530 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 IFIH1Q9BYX4 1025 aaKnown RBP15.51■□□□□ 0.07
COLCA1-204ENST00000540738 BARHL2Q9NY43 387 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 AMFRQ9UKV5 643 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 A6NJR5 290 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 TERF1P54274 439 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 RBM10P98175 930 aaKnown RBP15.51■□□□□ 0.07
COLCA1-204ENST00000540738 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.51■□□□□ 0.07
COLCA1-204ENST00000540738 P2RX5Q93086 422 aa15.51■□□□□ 0.07
COLCA1-204ENST00000540738 TMEM39BQ9GZU3 492 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms