RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 MAP3K9P80192 1104 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 MAEAQ7L5Y9 396 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 LMBR1Q8WVP7 490 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 NACC1Q96RE7 527 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 PRR12Q9ULL5 1215 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 PMS1P54277 932 aaKnown RBP11.87□□□□□ -0.51
CLIP1-213ENST00000540338 CIAPIN1Q6FI81 312 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 FMNL3Q8IVF7 1028 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 FAM151AQ8WW52 585 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 MTMR9Q96QG7 549 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 MTRQ99707 1265 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 ADAMTS3O15072 1205 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 EXOC3O60645 756 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 TADA3O75528 432 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 LEKR1Q6ZMV7 388 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 ZNF70Q9UC06 446 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-213ENST00000540338 VAV2P52735 878 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 GABPB1Q06547 395 aaPredicted RBP11.87□□□□□ -0.51
CLIP1-213ENST00000540338 GBP6Q6ZN66 633 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 PARD6BQ9BYG5 372 aa11.87□□□□□ -0.51
CLIP1-213ENST00000540338 BAZ2AQ9UIF9 1905 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 FLOT1O75955 427 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 CTTNQ14247 550 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 EXOC3L4Q17RC7 722 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 HOOK2Q96ED9 719 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 GMCL1Q96IK5 515 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 AGPAT5Q9NUQ2 364 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 DDX41Q9UJV9 622 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 CICQ96RK0 1608 aaPredicted RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 KLRC4O43908 158 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 SNHG28P0DPA3 235 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 KIF11P52732 1056 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 TRIM65Q6PJ69 517 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 SFR1Q86XK3 245 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 MKL1Q969V6 931 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 PNMA5Q96PV4 448 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 SELENOOQ9BVL4 669 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 FEM1BQ9UK73 627 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 PNMA2Q9UL42 364 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 ERICH4A6NGS2 130 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 EIF3CLB5ME19 914 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 PRPF6O94906 941 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 ODR4Q5SWX8 454 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 CENPPQ6IPU0 288 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 USP37Q86T82 979 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 ANKRD13CQ8N6S4 541 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 EIF3CQ99613 913 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 LARSQ9P2J5 1176 aaKnown RBP11.86□□□□□ -0.51
CLIP1-213ENST00000540338 TSKSQ9UJT2 592 aa11.86□□□□□ -0.51
CLIP1-213ENST00000540338 ATP8B1O43520 1251 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 AFPP02771 609 aaKnown RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 MOXD1Q6UVY6 613 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 TIAM2Q8IVF5 1701 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 GMCL1P1Q8NEA9 526 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 GOLGA5Q8TBA6 731 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 ERGIC2Q96RQ1 377 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 ZNF341Q9BYN7 854 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 FAM198AQ9UFP1 575 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 ZBTB12Q9Y330 459 aaPredicted RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PCDHA13Q9Y5I0 950 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 ERVK-24P63145 666 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 SLC35G1Q2M3R5 365 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PIGOQ8TEQ8 1089 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PSMB7Q99436 277 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PIM2Q9P1W9 311 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 ZNRF3Q9ULT6 936 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 M0R2N6 131 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PSMD14O00487 310 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 TCP1P17987 556 aaKnown RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 CYP2J2P51589 502 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 DCAF15Q66K64 600 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 EDEM3Q9BZQ6 932 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 PARVGQ9HBI0 331 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 BLOC1S4Q9NUP1 217 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 CCDC151A5D8V7 595 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 RASSF7Q02833 373 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 MED15Q96RN5 788 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 DUSP9Q99956 384 aaKnown RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 EIF2AK1Q9BQI3 630 aaKnown RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 SEMA6BQ9H3T3 888 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 CWC15Q9P013 229 aaKnown RBP11.85□□□□□ -0.51
CLIP1-213ENST00000540338 BCS1LQ9Y276 419 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 HYOU1Q9Y4L1 999 aa11.85□□□□□ -0.51
CLIP1-213ENST00000540338 IRS2Q9Y4H2 1338 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 NPHP3-ACAD11A0A0J9YXS1 232 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 LRRC53A6NM62 1247 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 CLIC2O15247 247 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SLURP2P0DP57 97 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SMTNP53814 917 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 EZH2Q15910 746 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 KNOP1Q1ED39 458 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 BICD1Q96G01 975 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 ABCB11O95342 1321 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 ERLIN2O94905 339 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SEC31AO94979 1220 aaKnown RBP11.84□□□□□ -0.51
CLIP1-213ENST00000540338 SERPING1P05155 500 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 RPA1P27694 616 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 RDH13Q8NBN7 331 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 AKT1S1Q96B36 256 aa11.84□□□□□ -0.51
CLIP1-213ENST00000540338 NUDT12Q9BQG2 462 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms