RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 MINDY4BA8MYZ0 360 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 C2CD4DB7Z1M9 353 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 NFIBO00712 420 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 PER2O15055 1255 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 ZNF286BP0CG31 522 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 ADD2P35612 726 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 ZSCAN25Q6NSZ9 544 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 CCDC62Q6P9F0 684 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 SLC30A10Q6XR72 485 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 TMEM184AQ6ZMB5 413 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 RUFY4Q6ZNE9 571 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 DCLK2Q8N568 766 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 PPTC7Q8NI37 304 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 ARHGAP45Q92619 1136 aa10.83□□□□□ -0.68
USP28-205ENST00000537706 EMID1Q96A84 441 aaPredicted RBP10.83□□□□□ -0.68
USP28-205ENST00000537706 ZNF689Q96CS4 500 aaPredicted RBP10.83□□□□□ -0.68
USP28-205ENST00000537706 MRPL42Q9Y6G3 142 aaKnown RBP10.83□□□□□ -0.68
USP28-205ENST00000537706 STAG3L1P0CL83 205 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 DNAJB1P25685 340 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 ATP8B2P98198 1209 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 ITIH3Q06033 890 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 CCDC96Q2M329 555 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 KCTD1Q719H9 257 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 SSH3Q8TE77 659 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 CASP10Q92851 521 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 APOL5Q9BWW9 433 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 RC3H2Q9HBD1 1191 aaKnown RBP10.82□□□□□ -0.68
USP28-205ENST00000537706 NOP58Q9Y2X3 529 aaKnown RBP10.82□□□□□ -0.68
USP28-205ENST00000537706 PI15O43692 258 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 DGKIO75912 1065 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 STXBP2Q15833 593 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 SPOUT1Q5T280 376 aaKnown RBP10.82□□□□□ -0.68
USP28-205ENST00000537706 GIMAP6Q6P9H5 292 aa10.82□□□□□ -0.68
USP28-205ENST00000537706 RANBP17Q9H2T7 1088 aaKnown RBP10.82□□□□□ -0.68
USP28-205ENST00000537706 RALYQ9UKM9 306 aaKnown RBP10.82□□□□□ -0.68
USP28-205ENST00000537706 GVINP1Q7Z2Y8 2422 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 BAHCC1Q9P281 2608 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 DCDC2BA2VCK2 349 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 IPO8O15397 1037 aaKnown RBP10.81□□□□□ -0.68
USP28-205ENST00000537706 PPFIA4O75335 1185 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 ASGR2P07307 311 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 SLC3A2P08195 630 aaKnown RBP10.81□□□□□ -0.68
USP28-205ENST00000537706 RPS6P62753 249 aaKnown RBP10.81□□□□□ -0.68
USP28-205ENST00000537706 VARS2Q5ST30 1063 aaKnown RBP10.81□□□□□ -0.68
USP28-205ENST00000537706 RIN2Q8WYP3 895 aaPredicted RBP10.81□□□□□ -0.68
USP28-205ENST00000537706 EPG5Q9HCE0 2579 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 LIMD1Q9UGP4 676 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 MRVI1Q9Y6F6 885 aa10.81□□□□□ -0.68
USP28-205ENST00000537706 ENPP3O14638 875 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 PPFIA3O75145 1194 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 BCAR3O75815 825 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 TBC1D8BQ0IIM8 1120 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 COL9A3Q14050 684 aaPredicted RBP10.8□□□□□ -0.68
USP28-205ENST00000537706 UBE3CQ15386 1083 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 LLGL2Q6P1M3 1020 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 SIX5Q8N196 739 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 NEDD1Q8NHV4 660 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 CHMP4CQ96CF2 233 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 ACSF2Q96CM8 615 aaPredicted RBP10.8□□□□□ -0.68
USP28-205ENST00000537706 MAF1Q9H063 256 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 PUF60Q9UHX1 559 aaKnown RBP10.8□□□□□ -0.68
USP28-205ENST00000537706 USP18Q9UMW8 372 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 SP9P0CG40 484 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 NPR3P17342 541 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 SYCE2Q6PIF2 218 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 RSPH3Q86UC2 560 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 NPAS4Q8IUM7 802 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 VN1R2Q8NFZ6 395 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 RASGRP4Q8TDF6 673 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 NSUN6Q8TEA1 469 aaKnown RBP10.8□□□□□ -0.68
USP28-205ENST00000537706 DCAF4Q8WV16 495 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 IWS1Q96ST2 819 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 ADAM7Q9H2U9 754 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 SMOC2Q9H3U7 446 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 POMKQ9H5K3 350 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 DBR1Q9UK59 544 aaKnown RBP10.8□□□□□ -0.68
USP28-205ENST00000537706 ANGPTL2Q9UKU9 493 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 LRFN2Q9ULH4 789 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 USTQ9Y2C2 406 aa10.8□□□□□ -0.68
USP28-205ENST00000537706 SOBPA7XYQ1 873 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 SPTLC1O15269 473 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 TDO2P48775 406 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 TDGQ13569 410 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 NONOQ15233 471 aaKnown RBP eCLIP10.79□□□□□ -0.68
USP28-205ENST00000537706 PAN2Q504Q3 1202 aaKnown RBP10.79□□□□□ -0.68
USP28-205ENST00000537706 HSP90AB4PQ58FF6 505 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 PPM1JQ5JR12 505 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 FAM26DQ5JW98 314 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 SYDE2Q5VT97 1194 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 THNSL1Q8IYQ7 743 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 YTHDC1Q96MU7 727 aaKnown RBP10.79□□□□□ -0.68
USP28-205ENST00000537706 ERVK-5Q9HDB9 667 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 CYP26B1Q9NR63 512 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 PAG1Q9NWQ8 432 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 DDX41Q9UJV9 622 aaKnown RBP10.79□□□□□ -0.68
USP28-205ENST00000537706 NCOR2Q9Y618 2525 aa10.79□□□□□ -0.68
USP28-205ENST00000537706 PLIN4Q96Q06 1357 aa10.78□□□□□ -0.68
USP28-205ENST00000537706 GREB1LQ9C091 1923 aaPredicted RBP10.78□□□□□ -0.68
USP28-205ENST00000537706 PRDM1O75626 825 aa10.78□□□□□ -0.68
USP28-205ENST00000537706 SMIM10L2AP0DMW4 78 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms